RNA id: AMCG00007460


Basic Information

Item Value
RNA id AMCG00007460
length 1404
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00007460
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19168814 ~ 19179046 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGCTCTGTTTGCATCAGCACTTTCTGTGGAGATGTCTTTTCTGGTTAatagaaaaacaggaaaagggACTTTGAGCCCGAGTCTGCAGCGGGGAACTGAATCCGCCTCCGACACACAATCCTCGCACATAAACACCCAAGATGGAAGGTAACCTGTCCGTGGTGCTTCATGCTGCGGGAGACCTTAGACTGGAAAACCGTCCCATCCCTGAGCCCGGCCCCAATGATGTGTTGCTGCGGATGCACTCGGTGGGGATCTGCGGCTCGGATGTCCACTACTGGCAGCATGGCAGGATTGGTGACTACGTGCTAAAGAAGCCCATGGTTCTGGGACACGAGGCCGCAGGACAGGTCGTCAAagtggggtcagaggtcagacaCCTCAAACCAGGGGACAGAGTTGCCATCGAGCCCGGGGTCCCACGGGATATGGATGAGTTTTTCAAAAATGGGCGCTACAACCTCTCGCCCACCATATTCTTCTGTGCCACCCCCCCAGATGATGGCAACCTATGCCGATTCTACACTCACAACGCCAACTTCTGTTACAAGCTGCCCGACAACGTGACCTTTGAGGAGGGGGCTCTGATCGAGCCGCTGTCTGTGGGAATCCATGCCTGTCGCAGGGCTGGGGTTACTCTGGGCAGCACCATGTTCATCTGTGGGGCAGGGCccattggacttgtttgtctaCTGGTTGCTAAAGCAATGGGAGCCTCTCAAGTTGTGATGAGTGACTACGCCATGCAGGTGCAGAAGGAGAGCGCAGCCGTGCTGGCGCAGAGGGTGAAGGGACTGCTGGGCCGCCAACCTGACATCACCATCGAGTGCACCGGAGCGGAGTCCTGCATCCAGACGGCCATCTATGCGACCCGGTCTGGTGGAGTGGTGGTTCTGGTCGGGCTCGGCAAAGAGATGGTCAACATTCCCTTGCTGGACGCCGCCGTCCGAGAGGTCGACCTGCGAGGAGTCTTCCGCTACTGCAACACGTGGCCGATGGCGATCTCCATGCTGGCCTCTCAGAAAGTGAACGTGAAGCCGCTGGTGACTCACCGCTTCCCCCTGGAGCAGGCACTGGATGCATTCGAGACCACGCGGCGTGGTCTGGGTGTCAAGGTCATGGTCAAGTGTGACAGGAATGACCAGAGTCCCTGAGGTCGTGCCGTCCTGCACCCCAAGCCGGACAGTCTTGCAAAATTCATACCGTATTCATAAAGCTTTCACCATCATGCGGAGttgaaacttgtttttttttctcccattatGAGtattaaacaagaataaaataaaacagaaaagcagctGTGTCCTCATTTTTCCTTTGAACAAATCAGAGGCAGCTAAGCCTCTCTCTGCAAAACAGAGATTTAAACTACATTTcaggaggaggacaaccccaatc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00008 SORD, gutB; L-iditol 2-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29891 lncRNA downstream 267217 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 301335 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 338727 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 383677 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 387722 18780837 ~ 18781092 (-) True G23842
TU30035 lncRNA upstream 300968 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 400735 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 612655 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 688812 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 1031973 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007463 mRNA downstream 28362 19137840 ~ 19140452 (-) True AMCG00007463
AMCG00007461 mRNA downstream 41794 19108984 ~ 19127020 (-) True AMCG00007461
AMCG00007462 mRNA downstream 67434 19087202 ~ 19101380 (-) True AMCG00007462
AMCG00007456 mRNA downstream 94668 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007454 mRNA downstream 112543 19050072 ~ 19056271 (-) True AMCG00007454
AMCG00007459 mRNA upstream 3553 19182599 ~ 19187092 (-) True AMCG00007459
AMCG00007470 mRNA upstream 303566 19482612 ~ 19512979 (-) True AMCG00007470
AMCG00007471 mRNA upstream 401372 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007475 mRNA upstream 424049 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007474 mRNA upstream 464907 19643953 ~ 19652843 (-) True AMCG00007474
TU29846 other downstream 391176 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1109865 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2546909 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2846163 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 736100 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1152467 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1292065 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4792625 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5086778 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile