RNA id: AMCG00007464



Basic Information


Item Value
RNA id AMCG00007464
length 723
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00007464
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19179795 ~ 19182234 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACGTGGAAGCGCTGACGCTGGACGCCCTGCGCAGACAGTCAGAGGCGCTGAACCTCAGCCACCGTGAGATCCGGCTGCTGCCGCCCGTGCTCTCGAAGCTGACCCGCTTAAAAAGACTGTTTCTAAACCACAATCGCCTTATTTTACCACCTAACGAGCTTTTGCACTTGGAGCAGCTAGAGGAGTTGGTCCTGGATGAGAACCAGCTGACTGTGTTGCCCAGTGAGATGGGTTGTCTGGGCCACCTGGGCTCTCTGAGTGTGAGCCACAACCCCCTCTCTGTGCTCCCTGCTCAGCTGGGGGAGCTGGCGGAGCTGGGCGAGCTGTGGGCCAACAGCTGCAACCTCATCTCCTTGCCTTCCTCGGTGTGCAAACTCCACAAACTCCGTAAACTCGGAGCGCGCAACAACCACATCACGGCCCTGCCCACCGAGTTCATGCAGCTGGCCAGCCTGCAGTGGTTGAACCTCGCCTGCAATGGGCTGTGGGAACTACCAGAGGGCTTTGGGACACTCCAGACCTTGACTTTCCTGAACTTGGATGGGAACAAATTTGAAGATGTTCCCGAGTCGCTGTCTGACATGCCCAGTCTTCTAGTGCTTCACATGAAGTCCAACTGCATTAGGTCACTGCCAGATGACCGAATCCTGGGATTTACTCAGCTGACTAAACTAGACCTGCGCAGAAACCCACTAACACAAAGACCTGCTCATTGGAAG

Function


GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29914 lncRNA upstream 67470 19049249 ~ 19112325 (+) False G23891
TU30099 lncRNA downstream 447070 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 468422 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 617251 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 620619 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 633561 19815795 ~ 19818345 (+) True G24088
AMCG00007458 mRNA upstream 12763 19143133 ~ 19167032 (+) True AMCG00007458
AMCG00007453 mRNA upstream 132036 19032084 ~ 19047759 (+) True AMCG00007453
AMCG00007452 mRNA upstream 164896 19007550 ~ 19014899 (+) False AMCG00007452
AMCG00007451 mRNA upstream 207591 18939265 ~ 18972204 (+) True AMCG00007451
AMCG00007450 mRNA upstream 283166 18875555 ~ 18896629 (+) True AMCG00007450
AMCG00007466 mRNA downstream 8512 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007465 mRNA downstream 36556 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007467 mRNA downstream 120875 19303109 ~ 19338989 (+) True AMCG00007467
AMCG00007469 mRNA downstream 260223 19442457 ~ 19451469 (+) True AMCG00007469
AMCG00007468 mRNA downstream 281322 19463556 ~ 19479089 (+) True AMCG00007468
TU29920 other upstream 123662 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 609331 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 887457 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 971487 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 977835 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1878167 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3099466 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4007226 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5009987 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8901588 28083822 ~ 28094741 (+) True G25822

Expression Profile