RNA id: AMCG00007468


Basic Information

Item Value
RNA id AMCG00007468
length 1728
RNA type mRNA
GC content 0.63
exon number 8
gene id AMCG00007468
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19463556 ~ 19479089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTAACTCTGTGATCTCACTTGTCTCCCAGGAGCTGCTGTTCAGTGTCTGTGCCCTAAATGTCATCTCCACGATCGTGTGTGCCCTGGCCACCGCTATGTGCTGCATGCAGATGGTCTCCACTGATGTCCTGCAGATGtttattCCTCATAGATCACGGTCTATGAACCCAGACTGTATGTCTCCGCACGGCACCATCCTGCACCAGACTCTGGATTTCGATGAGTTCATTCCTCCGATCCCTCCCCCGCCCTACTACCCTCCCGAGTACACCTGCACCCCTGTCCTGGAGGCACAGAGAGGCCTGCACCTGGACTTCCCTCACTCCCCATTCACAGCCATCTATGGAGTGCCTATCAACAGTCCTGGGACGCTGTACCCCTCAGAGCTGCCGCCCCCATACGAGGCCGTGGTGAGTCAGACGCCAGCCAGCCAGGTGAGGACCCCTGAGATGCCCCTTACTGTCACCAACAGTCTGGAGCAGCAGGGCACCGAATCCAGCCTCGCTTCCCTGATGGTGTCGGAGGTAGCTGACATGCCGGACCACAGCTGCTCCTCGGAGGACCTGTGCTCGCTGGAGGTGCAGGGCTCCCTGCGCTCCGCCGACTTCTCCCCCTACAGCACCATACGCACGGCTGCCACAGACGGCAGCTGCACCAGCCTGGAGCACAGCGCCCGTTGCGGACTGCGCCCTGGCCACTCTCACCACCACTCCCAGGGCTCCCCTGCTGGcgatggggaggaggaggaggcaggcTTCAGCGAGTCCTCTCTGGACCGCTCCCACACTCAGGGGTCCAACAACTGCACCCAGGACCACTCCCCTGACTGGTCCTCTGAGAACAACAGCACGCTGGAGAGGGAGGGTCACATGatgccccccaccaccacagaGAGGGCAGCCACCTCCACCGCCACTGCCGCCGCCTCCACCTGCGCCCCATcgccctcccccccaccccggcaGAAGAAGCTGTGCTTCAGCGTGTGGtccccctcttcttcctcctccttctctcagCCCCAGTCCAGCTCAGCCCTCAGCAGCACCTCACACTCCGGCAGCCAGGACCGGCCGCGGCGGCACCGGCGCTACAGGCTGTCCAGGATTGTCCGCTCCACCAGCGACCCTATCTCCTGCACGTCCATGTCTGGAAGCGACAGCTGTGGCGGCTCAGCTGCTTGTAATCAGGTTAATGATGACTCCCCCCAGACCTCACCTGAGCCAGTCTCCTGCCCGGTGGTGGTGTCGTACCAGGCTCCGGCCAGACGCACGCCATTCTCCCGGAAGCAGCAGAGGGTAGACATCAGGCTGAAGCCCAGGGCTGTGCAGGCCATCACCAAGGAGAGGCCCCGCTCCCTGGTGGACCTCAAGACATACAAGGACACCAAGATCCTGGTGGCCAAATTCCTGGAGCATTCCAGCTGCAACTTGCCCCCAGAGGTGCAGCACGTGGTCAACAGCATCAAGCACGTCATCAAGAGCGATGAGCGGCACATGGAGGAGGCCATCTTCAGTGCCAGCGTCATCGACCAGGTTATGACGAGCTCCCAGCATTCAGTGCATGGCCCCAGGAAGCGCCCCCAGGACGACCTGCACCTGCAGAGCTGTGGGGCGCTGAGctcgccctcctcctccctccggCGTGCACGGACAAACCACGCATCCCACCCTGACCGCCCACACAGCCTGATCGGAGTGTGCCGAGAGACCATCCTCTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29914 lncRNA upstream 351231 19049249 ~ 19112325 (+) False G23891
TU30099 lncRNA downstream 150215 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 171567 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 320396 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 323764 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 336706 19815795 ~ 19818345 (+) True G24088
AMCG00007469 mRNA upstream 12087 19442457 ~ 19451469 (+) True AMCG00007469
AMCG00007467 mRNA upstream 124567 19303109 ~ 19338989 (+) True AMCG00007467
AMCG00007465 mRNA upstream 226815 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007466 mRNA upstream 269211 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007464 mRNA upstream 281322 19179795 ~ 19182234 (+) True AMCG00007464
AMCG00007472 mRNA downstream 101325 19580414 ~ 19590900 (+) True AMCG00007472
AMCG00007473 mRNA downstream 113332 19592421 ~ 19602959 (+) True AMCG00007473
AMCG00007476 mRNA downstream 187712 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007478 mRNA downstream 301488 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007482 mRNA downstream 401979 19881068 ~ 19910112 (+) True AMCG00007482
TU29920 other upstream 407423 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 893092 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1171218 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1255248 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1261596 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1581312 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2802611 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3710371 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4713132 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8604733 28083822 ~ 28094741 (+) True G25822

Expression Profile