RNA id: AMCG00007470


Basic Information

Item Value
RNA id AMCG00007470
length 2346
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00007470
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19482612 ~ 19512979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCACAGAAAAAGGCAAGGGACAACCAGCGGCATGGCGGAGCCCAGAGCACGCCCTCTGCCTGCAGCCATCCCCCCCCTGGAGCCAGAGGAGGAACCTGAGCTGGAGGAGCTGAGGGAGCCGGGGGTCCAGGAGGGGCCGGGAGTGGTGCAGCACTCGTTTCACATCGAGGACCCTGAACTGAAGGACAGCCGCCCACCCACCCCCGAGCCCCCGGACCAGGACTGCCAGGACCAGAGTGGAGATGGTGACTCCAGCTCGGACTATGTGAACAACACATCAGAGGAGGAGGACTACGATGAGGGGCTGCCGGAGGAGGACGAAGGCGTCACCTACTACATCCGCTACTGCCCGGAGGATGACAGCTACCTGGAGGGCATGGACTGTAATGACAGGGACTACATCCCGCACCCTGAGGCTCCAGGTGACACAGACGAGTGCCAGGAGGCTGTGGAGGAGTGGGCTGAGTCCGAGGGGCAGTGTCTGTCCCTGGAGGCAGACAGGGATGATGAGCAGGCCTACGAGGAGCACCTGGAGCAGCCCCTGGATGACCATGCCATCCCTGCCGCCTCCCTGCAGCCTCCGCTcctgggagaggaagaggaggaggatgtagaagaggaggaggaagatgaggaTGATGAAGGAGAGGAGAGCGAGGAGTACTGCCCTGCTGAGGAGCCGTACCCTCAGGACTATTACGCCCCAGAGGCCAATGGGAATTCGGTCAGGGCGTCCCCTTACCGGACCCGCAAGGGGGGCGATGGGGAGGGCGGTGAGGACCAGGAGGAGGACATTGACCAGATTGTGGCCGAAATCAAGATGAGCATGAGTATGGGCAGCCTGAGCAGCGCCACCGACCCGAGCCCCGAGGAGCCAGGCGTGGACGGGGTGCCAAAGGACTTCCAGGACGCTGCTGTCAAGGCTGACCCCGCCCCCTGCGCCGGCAATCGCCACGAAGGGAGGCCCAAGTCGCTGAACATCCCCACCTCCACCCGGCACAATGCGGAGGTGCAGCGGGGCTTCAAAGTGCGTGCCCGGACTCCCGAGGAGCGGCAGAAGTGGGCTCAGGAGCAGGTGTCCAGTAATGCAGAACAGCCCAGAAAACAGCAGCGATCAGATCTTAACGGTCCtgctgaaaataacaacatCCCAGAGCAAACAAAGAAGACGGCCTCTTTCCCTAGCTTTGTGGATGTTCCAGGGCCCTGTGAGCCAGAGGACCTTATTGATGGGATCATCTTTGCAGCCAATTACCTGGGCTCCACACAGCTCCTGTCCGAGAGAAACCCCTCCAAAAACATACGCATGATGCAGGCTCAGGAGGCCGTGAGTCGTGTCAAGAGCCCAGAAGGGGATGCCCAAACGCTGACTGAGGTGGACCTGTTCATCTCCACACAGAGGATAAAGGTGCTGAATGCAGACACACAGGAGACGATGATGGACAATGCCCTGCGGACCATCTCCTACATTGCAGACATCGGGAACATTGTGGTTCTGATGGCGCGACGCCGCATGCCGCGCTCCGCCTCGCAGGACTGCATCGAGACCACGCCCGGCACCCAGGAGGGGAAGAAGCAGTACAAGATGATCTGCCATGTCTTCGAGTCTGAGGACGCACAACTTATCGCACAGTCTATTGGGCAGGCATTCAGTGTGGCCTACCAAGAGTTCCTGAGAGCCAATGGCATCAACCCCGAGGACCTCAGCCAGAAAGAATACAGCGACATCATTAATACTCAGGAGATGTACAATGATGACCTCATTCATTTCTCCAActcagaaaactgtaaagagCTGCAGCTGGAGAAGGTAAAGGGGGAGATCCTTGGCGTGGTGATCGTGGAGTCTGGCTGGGGCTCCATCCTGCCCACCGTCATCCTTGCCAACATGATGAATGGGGGCCCGGCGGCACGCTCTGGCAAGCTGAGCATCGGGGACCAGATCATGTCCATCAATGGGACCAGCCTGGTGGGCCTCCCACTTGCCACCTGCCAGGGCATCATCAAGGGCCTGAAGAACCAGACGCAGGTGAAGCTAAACATCGTGAGCTGTCCTCCTGTCACCACCGTGCTCATCAAGCGGCCAGACCTCAAGTACCAGCTGGGCTTCAGTGTGCAGAATGGCATTATCTGCAGCCTGATGAGGGGTGGCATCGCGGAACGCGGGGGGGTGCGAGTCGGCCACCGCATCATTGAGATCAACGGGCAGAGCGTGGTGGCCACGGCACATGAGAAGATAGTGCAGGCCCTGTCCAACTCAGTGGGCGAGATCCATATGAAGACCATGCCGGCAGCGATGTTCAGACTGCTGACAGGACAGGAGACCCCCATGTACATCTAG

Function

GO: NA

KEGG:

id description
K20055 APBA2, X11L; amyloid beta A4 precursor protein-binding family A member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30035 lncRNA downstream 1525 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 581015 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 615133 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 652525 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 697475 18781214 ~ 18785137 (-) True G23843
TU30064 lncRNA upstream 66802 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 278722 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 354879 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 698040 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 698040 20211019 ~ 20222004 (-) True AMCG00007494
AMCG00007459 mRNA downstream 295520 19182599 ~ 19187092 (-) True AMCG00007459
AMCG00007460 mRNA downstream 303566 19168814 ~ 19179046 (-) True AMCG00007460
AMCG00007463 mRNA downstream 342160 19137840 ~ 19140452 (-) True AMCG00007463
AMCG00007461 mRNA downstream 355592 19108984 ~ 19127020 (-) True AMCG00007461
AMCG00007462 mRNA downstream 381232 19087202 ~ 19101380 (-) True AMCG00007462
AMCG00007471 mRNA upstream 67439 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007475 mRNA upstream 90116 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007474 mRNA upstream 130974 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007477 mRNA upstream 201214 19714193 ~ 19717796 (-) True AMCG00007477
AMCG00007479 mRNA upstream 211228 19724207 ~ 19751795 (-) True AMCG00007479
TU29846 other downstream 704974 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1423663 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2860707 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3159961 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 402167 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 818534 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 958132 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4458692 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4752845 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066158 False 2637 mRNA 0.53 12 NC_007118.7 30823749 ~ 30914649 (+)