RNA id: AMCG00007471


Basic Information

Item Value
RNA id AMCG00007471
length 1804
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00007471
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19580418 ~ 19583227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCTCCATGTTGAAGGTTGCGGtgGTGCTTTTGTGCTGTGCTTTTATAGTTACAGGTATCCTAAGCACTTCACGTTGTGCGGCCCCACTACGCAGGACGTTTGCAGTGTCCAGGTCTGTGCGTCAAGGTGGGCCGAGTCCCGTATGGAAGCTCGGAAGGCTCAATCACGTTGCCGTCGCGGTTCCAGACCTGGAGAGAGCCACCGCTCTGTACCGGGACGTGCTAGGCGCACAGGTGAGCGCCAGGGTGCCACTGCCGGAGCACGGGGTCTACACCGTGTTTGTGGAACTGGGCAACACCAAGCTAGAGCTCCTGCACCCGCTGGGAGAGAAAAGCCCCATCGCGGGATTCCTGCAGAAGAACAAATCCGGCGGGATGCATCACATTTGTATCGAGGTGGATGATATCAACTCAGCTAtacgtgatttaaaggctaagaagATTCGGACTCTGTCGGAGGAGCCCCGCATCGGAGCGCACGGTAAACCTGTCATGTTTCTCCACCCTAAAGACTGTGATGGGGTGCTCGTGGAGCTGGAAGAGGCCTGACCTCGTACAGCCTACTGGGGACCGAGCAGGAGCTCCGAAATGGAAGGTAGAACTTAAAGGAAGAACAGACTTCCCAAAGAATTTCTGAAGACCTTGCAGTGGAGTGAAGTCCATTAAATCAATATTCCAGGATGCCTTCATTGTGACCCTGAGTGTAACACTAATGCAGAAGATGTGTAGGAGCGAGGGATACGTTTGTTAGTTTGAAttcttctctgttttatttgttgctgTTCTCTTTTCTTAGCATTTCTTTGGTACCCCTTCCATTCAAACATGCCTTAACACTTTGAGGACttgttactgtactgttttcCCTCGTGCAGTTGGTCTTTAAGGCcagagttgttttttattttatttgaagttgTCTGTATATTTGTGACATTGTTAATTTTCCAGATGATACTTGAGATGTAAATTGGCAgactgcattttcattttctacatCCAGCTGAATTCTGTATAATTTTCACCTCAGGTTGTAATGGCCAATTAAAGATTCAAGTCATTGCTTCAAGCAGAATGTGTCCAATTTGCTGCTATTTCATTAGAGATTGAAAGTGGATTTggaaactgttaaaaaataaatgattgaaatTCCTGGAATctattaattttactttataaCCTTGTTTTATGGAGCAGccttttttaattgatcaaattaaaatttgaattgtattttctaattttaaaaagtaaagtggatgagttttgttttcatacattttttggtggaaatgtagtgtttaatttaaacatttagcaATCGGTAGTTTCTTTGCAAGCATCTTTAAGTCAAAATtacatgttgtatttatttaattatttaatcatagTGCTGTTAATATTAAATTCTGTGTAAATATAACCTACCTTCagagcaaattatttttgtaatttgtttaacaCTGCAGTGACACATAAACCATTAAGGTTAACATTCTTGTGGTGCAGCTAAAATTTAAATAAGTTGGACTCAAAACCTGGCAAGTCTGGCAAGCAAagctgtcattttaaaacagcttgGATGGTTTCCACATCCAGCCAGCATACAATTTCACTCCtcaagtgcttttttttttccctcagctgAAATTCAAAGTGTTGCATTTTTAAGCAAAAGGAGGATTAAGCCACTGTATCTTGAGAGTGTCAGTAACCATATCTGTTCAACCCCTTTTAGTGTGGTCCCAGTGTGATTCGATATTCagtattttcttcttctaaataaactttttttttt

Function

GO: NA

KEGG:

id description
K05606 MCEE, epi; methylmalonyl-CoA/ethylmalonyl-CoA epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30064 lncRNA downstream 434 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 99331 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 678821 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 712939 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 750331 18829865 ~ 18830087 (-) True G23854
TU30182 lncRNA upstream 208474 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 284631 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 627792 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 627792 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 627792 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007470 mRNA downstream 67439 19482612 ~ 19512979 (-) True AMCG00007470
AMCG00007459 mRNA downstream 393326 19182599 ~ 19187092 (-) True AMCG00007459
AMCG00007460 mRNA downstream 401372 19168814 ~ 19179046 (-) True AMCG00007460
AMCG00007463 mRNA downstream 439966 19137840 ~ 19140452 (-) True AMCG00007463
AMCG00007461 mRNA downstream 453398 19108984 ~ 19127020 (-) True AMCG00007461
AMCG00007475 mRNA upstream 19868 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007474 mRNA upstream 60726 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007477 mRNA upstream 130966 19714193 ~ 19717796 (-) True AMCG00007477
AMCG00007479 mRNA upstream 140980 19724207 ~ 19751795 (-) True AMCG00007479
AMCG00007481 mRNA upstream 209473 19792700 ~ 19799752 (-) False AMCG00007481
TU29846 other downstream 802780 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1521469 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2958513 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3257767 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 331919 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 748286 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 887884 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4388444 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4682597 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile