RNA id: AMCG00007472


Basic Information

Item Value
RNA id AMCG00007472
length 4450
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00007472
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19580414 ~ 19590900 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaaaaaaaaaaagtttatttagaagaagaaaatactGAATATCGAATCACACTGGGACCACACTAAAAGGGGTTGAACAGATATGGTTACTGACACTCTCAAGATACAGTGGCTTAATCCTCCTTTTGCTTAAAAATGCAACACTTTGAATTTcagctgagggaaaaaaaaaagcacttgaGGAGTGAAATTGTATGCTGGCTGGATGTGGAAACCATCcaagctgttttaaaatgacagctTTGCTTGCCAGACTTGCCAGGTTTTGAGTCCAACTTATTTAAATTTTAGCTGCACCACAAGAATGTTAACCTTAATGGTTTATGTGTCACTGCAGtgttaaacaaattacaaaaataatttgctctGAAGGTAGGTTATATTTACACAGAATTTAATATTAACAGCActatgattaaataattaaataaatacaacatgtaATTTTGACTTAAAGATGCTTGCAAAGAAACTACCGATtgctaaatgtttaaattaaacactacatttccaccaaaaaatgtatgaaaacaaaactcatccactttactttttaaaattagaaaatacaattcaaattttaatttgatcaattaaaaaaggCTGCTCCATAAAACAAGGttataaagtaaaattaatagATTCCAGGAatttcaatcatttattttttaacagtttccAAATCCACTTTCAATCTCTAATGAAATAGCAGCAAATTGGACACATTCTGCTTGAAGCAATGACTTGAATCTTTAATTGGCCATTACAACCTGAGGTGAAAATTATACAGAATTCAGCTGGatgtagaaaatgaaaatgcagtcTGCCAATTTACATCTCAAGTATCATCTGGAAAATTAACAATGTCACAAATATACAGAcaacttcaaataaaataaaaaacaactctgGCCTTAAAGACCAACTGCACGAGGgaaaacagtacagtaacaaGTCCTCAAAGTGTTAAGGCATGTTTGAATGGAAGGGGTACCAAAGAAATGCTAAGAAAAGAGAAcagcaacaaataaaacagagaagaaTTCAAACTAACAAACGTATCCCTCGCTCCTACACATCTTCTGCATTAGTGTTACACTCAGGGTCACAATGAAGGCATCCTGGAATATTGATTTAATGGACTTCACTCCACTGCAAGGTCTTCAGAAATTCTTTGGGAAGTCTGTTCTTCCTTTAAGTTCTACCTTCCATTTCGGAGCTCCTGCTCGGTCCCCAGTAGGCTGTACGAGGTCAGGCCTCTTCCAGCTCCACGAGCACCCCATCACAGTCTTTAGGGTGGAGAAACATGACAGGTTTACCGTGCGCTCCGATGCGGGGCTCCTCCGACAGAGTCCGAATcttcttagcctttaaatcacgtaTAGCTGAGTTGATATCATCCACCTCGATACAAATGTGATGCATCCCGCCGGATTTGTTCTTCTGCAGGAATCCCGCGATGGGGCTTTTCTCTCCCAGCGGGTGCAGGAGCTCTAGCTTGGTGTTGCCCAGTTCCACAAACACGGTGTAGACCCCGTGCTCCGGCAGTGGCACCCTGGCGCTCACCTGTGCGCCTAGCACGTCCCGGTACAGAGCGGTGGCTCTCTCCAGGTCTGGAACCGCGACGGCAACGTGATTGAGCCTTCCGAGCTTCCATACGGGACTCGGCCCACCTTGACGCACAGACCTGGACACTGCAAACGTCCTGCGTAGTGGGGCCGCACAACgaaaaataaatagtacgACTCACCCGCAACCTTCAACATGGAGGCCGCCATTTTGGTTTTCAACacaactttatttaaattatagggATAACTAACTCTCTCCAACAGCAGCCGAAACCcggtttaaaatacaaaactaacaaacaagaAGTGAACGTTTTCTTGAAGCACGATGATCTGTGACCAAAAACgatttgtttgtgttatatACTGTTAACGTAATctcacaaaatatgttttataaaacactaTTCAGTTATGTCCAGatgttgcaaaaatatatattttcatagaGCTAtgcttaaattatatatacatatacaaatatctaTTTGATGTATGAATGGGGACAGCAGTCTaggtacatttgttttccagcgCCCCGGAACTCGTGTTGTGCGTCTCGGGTTGCAGTCGACCCCTCAGCCGGCGGACAGCGGGTCCCCGGGACAAGCTTCCGTGCGAGACCAAAGTTACCCATGTGAATGAAACGATGGCAGCGTTGGACCCGGGACCCACGTTGGAAAGcagtttaaaacttttaaacacCAACATTGCACACCCTGAACAGTTTTTAAGTCTCCAAGATGGCTTGGCTTCAGAGTTCACCCTCCTCACAAAGACACTGTATGATCTGCACAAAGCTCATGAGCCCTCCTGCGTGAAAGGTAGCCCCCTGAAAGAACTGGTGGTGGAGAACTTTGATGAAGAACAAATCTGGCAGGAGCTGGAACTGCAGAACAACGCAGTGCTCACACATTTTGAGAAAGCAGTGAGAAAAGCTGTCGAGGATGAGGAGATACAGTTCCCTGGGGTGGTGGAAGAAGAGCAGGAGGCAGAGGATATTGAGATAGGGGAGAAATCAGCAGATGAAGAGAACCAAGATCAAGAAGATGAAGATGGAAATCCAGATGacagtgaggaagaggaggaggaggagagcaaaCCGAGATCCAAGAAGGCTTCAGCTGTTTCCAAGGCTATCAAGGAGTTCAGTGATGAAGACTCGGATGTGGACTTTGACGTGGACACCCTGGAGAAGCAGAGCAGAGGGAAAGCACAGAGGCCTGCAAGGTCGGGGAGGGGCTCCTTGGTGGACGACAGGTTCTTCAAGCTGGCTGAAATGGAGGCGTTCCTGGAAGACATGGAGAAGACGGAGGAGCGAGGGGATGAAGGTGACAGCGAGATCGATTACTTTGAGGACATCCAGTCCGAGGatgaggagctgctgctggaggaggagagcgCCGTCAAGACAAAACTGAAGCCTCAGAGGAGTTCAAGAAACCTGAAGTACAAGGACTTCTTTGACCCAGTGGAGGGCAGTGCTGCCCAGAGGGATCAGACTGAAGAAGACGAGGATTTGGGGTCAGAGGCAGAGGAAGGCAGTGAGGGGGAAGAGGAGATGGAAGACGAGGAAGAcatggaggaagaggaGGACGAGATGGACGAGACTGCCGACAACGAGGAGAGCCAGCAAGCCAAGGAGGCCTTTAAGAGAGTGACCTTTAACCTTTCAGATGACAGCGATGGGGAAGATGTGGAAGACATCCTcggaggaaaaaaacagaccTCTGAGACGCCAGAGTCCAAGTCTGCCTTTGAGAAACGCCAGGAAAAGATGGCCATGAAGGTTCGGGAGCTGGAGAAGGCAGCTCTGGAGGAGAAACCGTGGCAGCTGATGGGAGAGGTGTCATCTCAGAAGCGCCCGGAGAACAGCCTGCTTGCGGAGGACCTGGCGTTCGATCAAGCCACCAGGCACGCCCCTGTGATCACTGAGGAAACCACCCTCCATCTGGATGACATCATCAAGCAAAGGATCAAGGACCAGgcATGGGACGATGTTGTTCGCAAAGAGAAGCCCAAGGAGAACACCTTTGAGTACAAGAAGAGGCTGACGCTGGATCACGAGAAGAGCAAGCTCAGCCTGGCCGAAGTGTATGAGCAGGAGTACCTGAAACAGACCCAGCAAaagaaagaggaggaagaaaaccCAGCCCACGTGGAAATCCAGAAGCTCATGGACTCCATTTTCCTGAAACTCGACGCTCTCTCTAATTTCCAGTTCACCCCCAAGCCGCCCGTGCCTGAAGTCAAGATTGTCTCTAATCTGCCATCCATCACGATGGAGGAGGTGGCACCAGTCAGTGTCAGCGATGCCACTTTGCTCGCTCCAGAGGAGATCAAGGCAAGCCttGAAAAGAACAAAGCCGGAGACATCCAGGGCGATTCCGAGAAGACGGCGACGGACAAGAAGCGCGAGAGACGGAAGAAGAAGCTGCAGAAGAAGTTCCGgctgaaggagaaggagaagcagCAGAAActgagggaggagatgaagagtGGGGAGAACAGGAAGCTGAGCAAGACGGaggctgcagagtcactgaagAAACTGACCAAGGGAGGGAAGGCCACAGTGCTCAAGGATGAGGGAAAGGACAAGGTACTGCGCTCCTCCCAGGCCTTCTTCTCCGAGCTGCAGGATCAGGTGAAGATGCAGATCAAAGGGGTGAAAAACCAGTCtgcgaagaagaagaagaaggaagtGTCAGCCAGCAAGTTAAAGCTGTAACATTGGTGGAAGGGgtggtcattttttttattttttttgtgtacagacttgatgcattgtttttttcttttataagtattatttacttaattccCCTTGCACATTATATGCAGTCACTTAAAATAAAGGACAAACTTTGGAACATC

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29914 lncRNA upstream 468089 19049249 ~ 19112325 (+) False G23891
TU30099 lncRNA downstream 38404 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 59756 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 208585 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 211953 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 224895 19815795 ~ 19818345 (+) True G24088
AMCG00007468 mRNA upstream 101325 19463556 ~ 19479089 (+) True AMCG00007468
AMCG00007469 mRNA upstream 128945 19442457 ~ 19451469 (+) True AMCG00007469
AMCG00007467 mRNA upstream 241425 19303109 ~ 19338989 (+) True AMCG00007467
AMCG00007465 mRNA upstream 343673 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007466 mRNA upstream 386069 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007473 mRNA downstream 1521 19592421 ~ 19602959 (+) True AMCG00007473
AMCG00007476 mRNA downstream 75901 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007478 mRNA downstream 189677 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007482 mRNA downstream 290168 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007483 mRNA downstream 348270 19939170 ~ 19951428 (+) False AMCG00007483
TU29920 other upstream 524281 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1009950 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1288076 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1372106 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1378454 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1469501 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2690800 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3598560 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4601321 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8492922 28083822 ~ 28094741 (+) True G25822

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU410711 True 1191 TUCP 0.51 8 NW_019172829.1 2111967 ~ 2119737 (-)