RNA id: AMCG00007473


Basic Information

Item Value
RNA id AMCG00007473
length 3653
RNA type mRNA
GC content 0.59
exon number 14
gene id AMCG00007473
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19592421 ~ 19602959 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGAAAGGCCGGGAAACAACAAAGTGCATTTGTCAGATGATGGTATTGACACTTGCAGGATGGGTTTCCCGGCCTCAGTGAAGgagctgttttgttgttcttctcTTCAGCTAAGGACATAAAAAGCATCAGTCTCTCAGTATGGCTGAAGGACACTCCCCAGGGAAAGGGAGGCAGCGACGGAGTTTGTCattgaagaagaacaagaaaacgACGACTACAACAGGTGGGAGAGACTCGGTGCGGCCTGGTTCTCAGAGGACCGGCTCCATCCTCTCATTCTTTAACAATGCCCCACCGGCCAGGCTAGCGTGCCCAATCTGTGGGGAGATGGTCCCAAGATTTTGCATGAACCAGCACATCGACAACCAGTGTGAGCAGTTCtgcaaggaggaggaggaaagcaaaagtatgttttttgttagcaACAGCAGTCAGAACCCAGTCAGATCTCTTGAGATCACATcacctccaccccctcctcctccccgaACCCCAGAGAAAACCCCAAGCCGATGTGCGGCCTCCAGCCTGGACCAGGCTGATGCCTCTCCGAgtgtggagaaggagaagaagcagTCTAGCCCTTACTTCAAAAAGCTCACCCTCTCAGTGGAGGCCCGGGAGGTGTGCAGCCAGGCCAAGGTGGTCAGAGTGGTCGACCTGGGATGCCTGGCTTCGAAATTATCGAGGAAGCGCCAGAAACTAGACCTGGGATCGCAGCAGAGCCTCGCACACACATCTGCAACTTCCCCAGATGACTCCAACATCACTTTGGAAGAGGCCAAAGACACTGGAGCCCTGAGCAGCTCACAGAAGGAGAATCAGTACGTGCAGCTGTCCAGCACAGTGCCTGGGAGATTTGAGGGCAATGATGATTTGACCAGTCTGGGGGTGCAGGGGGCTCCTGGGGACGATGGATGCAAAGGGCCGGGGATTTTCACTGTAGACCTGAAGGGACCAGGGACGCATCGGACAAAGGCGCCCGAGTCTCAGTACGAGACATCCTCATCAGCGGCTGTAGCCTCGACGCAATCTGTCCCCACATTGCGATCAAGCCGGAGCAGGAGCCGTGCCGCTCCCAGGGCCGATGCTTCCCTGCCGACTCTCAGTCACAGGGTGCGCAGCAGCTGTAAAAGGCAGAGAAACAAAGGCAGCACCAACCCAGCGAACCAAGCCTCTGCACCCTTCTCCGCTCCTCCGAGAGGTAACGAGGACGGAAACACCACCAGCCAGAAAATGGCAACTGCAATGCCAGCCCCAAAGGAGGGGCACAAGGAAGCGGAGTATCTCGGTGCTGGCGGGGGAACCAACACACCGGTCGAGAGCGCAAGCGCTGCAGACAGCCTCGGTGGTGCACCTGTGACAGGGGTGGGCAGCAGCAATGGGGGAGTTGTGCCCGAGTCACCCAGGCTCCCTTACTACCTAAGGAATTTCCTGTCAGTGCTGGAGGCTGTGCTGGAGAACGAGGACGACAGGCAGCTCTTCAACCAGGACGACATCAGGACCATCGACGCCTTCCGCCAGCTGTCAGTGGCAGGGCAGAAGCTCTATGTGAGGCTGTTCCAGAGGAAACTGCACTGGCTGAAGGTGAACAAGCTGGACTACCCCGAGATAGGGCCCGACCTGTCGCCAGGGATCCAGGAGCTGGTGAAATGTGGCTTCCTGCAGACAGAGTCTGAGCTGCAGGAGCTCACTGAAGTTCTGGAGCTGCTCCCTGCCCCGGAGTTGAAGGCCCTGGCCAAGACCTTCCACCTGGCGGGGCCGGGTGCCCAGAAACAGCAGCTGACCGACGCGCTCCTGCGCCTCTCCCGCCAGCGCCCGCTGTTCTCTCTGGGCCGCTCCCAGCATGGCACCGCCACCGTCATTCTCAGGAGGGCGAAGGAGCTGGCCGGAGCCTGTGTGCGCGTGTGCCGCGCCCCCCGCGCCGTCTTCTCCCGTCTGCTGCTGCTCTTCTCCCTCACGGATGgtgtggaggaggaagaggcgGGGGCGGGTGGGCAGGGTCAGCTCTACACAGTGCTGATGGTCAACATGGGCCGCCTGACCTTCCCCACATACACCGTCCAGCGCAGGGCCAGGGTCTTCAGGGACAGAGATGACCTCATCAGGTACGAGGAGGCGGCCCGCTGCCTGGCTGAGGTCATGGGCGCAATGCAGAGCGGGGCCTGGGAGGAGGCACGGCTGCTCTACGACGCAGCCAAGACAGCCTGGCAGGACCTGAGCCACACCGCTGACCTGAGGCACGAGGAGGACCTGCCCGTTTTCCTACGCTGTTTCACCGCCGGCTGGGCCTACATCCGTGTCCGCTCGCGCGGCGTGGAGATTCTGCAGAGACTCAAGCTGTATGAGGAAGCTGTGGAGGAGCTGCGGTCTCTGCTGGCTCAGTCAGTCTACTGTCCAGACAGCAGGGGGCGCTGGTGGGACAGGCTGGCGCTGAATTTGCAGCAGCATCTCAAACGCACTGAGGAGGCCATTGACTGTATCAAAGCCGGGCTGTCGGACCCTCTGGTACGAACTGGCCATCAGCTGTCTCTGTACCAGCGCGCGGTGAGGCTGAGAGAGTCGCCCAGCTGCAGGAAGTTCAGACTCCTCCTCAGGGACATCCCCGCTGTGGAAGTGAAGGATGTTCCTCATGTGACGATCCGAGGGCGGATGTGTCCTCAGTCGGGGATGGGGaagtctgtgtttctgatgcaggaggaggaggaggaggaggagggggtggtggtCCAGGATGGAGGTGACCGTGGCGATGCCCCCCTGACCACAGTCATGTGCTCTGTGGAGGAGCTGGCACTGGCGCACTATCGGCGGCAGGGATTCCCCCAGGGGATCCACGGAGAGGGGTCCACCTTTTCCACCCTCTACGGACTCCTGCTGTGGGATATCATCTACATGGATGGGATTGCGGACGTCTTTCGAAATCCGTACCAGAGCTGCCCCCTGGACCTGCACACGGACTGCTTCTATGAGAACAGGCGGGCAACTATTGAGGCCCGGCTCGAACTGCTGCAGGAGGCCTCCACCGAGACGCTGCAGGCTCTCCTGGCCGACACCTGGTGTTCCCAGGAGGGCAAGGCGTCGACGCTGGTGAACTGGGAACGGTTCTCCTCGCTGCAGCAAGCACAGAGCCTGGTGGCGTGCCTTGGGGGGCCGTTCCTGAGTGGGCTGGTACGACGGATGGCTGGAGACTACAGACACTGCCGGGGGGGGCTGCCTGACCTGGTGGTGTGGAACACGGACAACAACTCCTGCAAGCTGGTGGAGGTGAAGGGCCCAAGCGATCGGCTGTCCCAGAAGCAGATGATCTGGCTGGACGAGCTGCAGAAGCTGGGGGCGGAGGTGGAGGTGTGCCATGTGACAGACGTGGGGGCGCGGGGCAAGAGGCTGAGCTGAGCCGGAAAGACCGGCGTGTTTTAAAACTGCAAGGAAACTAAACTGAACACAAACCAGGCAACACAGACCAACCAACAAAGCACTACATTAATAAGTGTCACGTCACTGCACTTCACGTGCACTAACCTGGTGCAGCACGACCCGTCAAGATGGTTGATCAGCAGTGGCAGAGACTAAGTTTAGATAAAATCACACTTGTGTATGctttattgtaatatatgtatattaaacgaattaaaaacattgatttaaa

Function

GO: NA

KEGG:

id description
K15363 FAN1, MTMR15; fanconi-associated nuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29914 lncRNA upstream 480096 19049249 ~ 19112325 (+) False G23891
TU30099 lncRNA downstream 26345 19629304 ~ 19630607 (+) True G24030
TU30112 lncRNA downstream 47697 19650656 ~ 19650874 (+) True G24040
TU30167 lncRNA downstream 196526 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 199894 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 212836 19815795 ~ 19818345 (+) True G24088
AMCG00007472 mRNA upstream 1521 19580414 ~ 19590900 (+) True AMCG00007472
AMCG00007468 mRNA upstream 113332 19463556 ~ 19479089 (+) True AMCG00007468
AMCG00007469 mRNA upstream 140952 19442457 ~ 19451469 (+) True AMCG00007469
AMCG00007467 mRNA upstream 253432 19303109 ~ 19338989 (+) True AMCG00007467
AMCG00007465 mRNA upstream 355680 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007476 mRNA downstream 63842 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007478 mRNA downstream 177618 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007482 mRNA downstream 278109 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007483 mRNA downstream 336211 19939170 ~ 19951428 (+) False AMCG00007483
AMCG00007488 mRNA downstream 375981 19978940 ~ 19992609 (+) True AMCG00007488
TU29920 other upstream 536288 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1021957 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1300083 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1384113 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1390461 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1457442 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2678741 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3586501 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4589262 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8480863 28083822 ~ 28094741 (+) True G25822

Expression Profile