RNA id: AMCG00007477


Basic Information

Item Value
RNA id AMCG00007477
length 1919
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00007477
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19714193 ~ 19717796 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTATGAAGCCGCAGCCAATGAGAACGCGCGGAGCGGTATTTGAATGCCCTGTGAGTGCAGTACAAGCAACTCGCTTTGTGGAGATTGATCTGAAACTTTTAAGAGGGCCTTTTAAAACCTACGGTGTCGTTAGTCACTGGTGTTTTTTTGGACCTTGTGATCGCATTTCGTTTAGTGCGATACTGTTTGCTGCTTTAATCGAAATGGCTTTGGCAACCCGTGCGGTGAACATCCGAAATGCTGAGAACTCCGTACCTATGGGAAAGGCCGTGATGGGAGCCAAAAGGGCTGTGCTGGGCGAGATCTCCAATCTCTCAAACAAAGGAGGCCCGTTCAAGAAAACCGAGTCATTGAAATGCCATGCTGTGAAGTCCTCCAAGCCAGCGTCCTCCAAGGCTGTTGCCGCCAAGCTCCAGGCGAATGCGTTGGTCCAGACCAAGCTGCCTCCAGTGCAGCCTGAGGTCCCGGCTGTTACTCCAATGGATGTCTCCATGAAGGAGGAGGAACTGTGCCAGGCCTTCTCTGACACTCTGCTGAATGTGGAAGACATTGATGCATTTGATGCTGAACAGCCCCAGCTCTGTGCTGAATATGTGAAggatatatatgtgtatctgaGGCAAATTGAGGTACAGCAGTCTGTCCGGCCCAAATACCTAGAAGACTGTGAGATCAACGCGCGCATGCGGGCCATCCTTGTGGACTGGCTGATCCAGGTGCACTCCAGGTTTCATCTGCTGCAGGAGACCCTGTACATGACTGTTGCGATCCTTGACCGGTTCCTTCAGGTGCAGGAAATCTCCAGGAAAAAACTGCAGTTGGTTGGTGTGACTGCCATGTTTATCGCTGCCAAGTATGAAGAGATGTATGCCCCTGCGATTGGTGACTTTGTCTACATCACGGATGATGCCTTCTCCAAAGCCCAGATTCGGGAGATGGAGATGCTGGTTCTCAAGGAGCTGAACTTCCAGCTGGGACGCCCGCTGCCTCTTCACTTCCTTAGGAGGGCATCAAAAGCTGGCAATGCTGATGCTGAGAAGCACACCCTAGCCAAGTATTTCATGGAGCTGACCCTGATGGACTATGACATGGTGCAGTATCACCCCTCTGAAATTGCAGCTGCAGCCCTCAACCTCTCCCAGACATTGCTGGATGGAAGCAAATGGTCAATGACCCAGCGGTGCTATAGTGGCTACACTGAAGACCACCTCAAGCCCATCATGCAACACATTGCCAAAAATGTGGTGAAGGTCAATGACCGGCTCACCAAACACACTGCTATCAAGAATAAGTATGCCAGCAGCAAGCTGATGAGCATCAGTACCATTCCTCAGCTGAAGTCTGCAGTCATCCGGGAGATGGCTGCACCACTGCTGGAGAACTCCTAACCTGACCTAGTTTTTACTATGGACTCCTGACTTCTGCACTTTTAAAAGACATTTCACTATTCCACTATCTGGGGAAAGTTATTGCTGCTTTATTGTAAATAGTTTTCtgtacctttctttttttttttgggagacTTGTTTTCCTCCCCCTCaaattttaactttttacttTAGCAAGAATTCAGAAATGTTGACTTTTGATGTAGCCCTTAACTGGTGTGTAAAGATTTAGGCAGGGTggtcttgattttattttaattttgttctagTACTTTTAGATTCCATCCTATGCTTTCCTTCCTCATGGCCTCCTATTCCAAGTGAGGCTAGGGATGAGGGGAAGCTGTTCAGTCCAGCTGGCAGGTTTGTGGTTTACATTTAGTGCTTCACCCCTTCTACCAAAATGGCCTGATCTGTGAGCTTTGACTTGCTGATTACACTGAGCCATACAATAACTACCGtttattactgtaaatgttttgtaattgtaaatccTGCTTGTGAACTTTTAATAAATGGATCGAATGTG

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K21770 CCNB2; G2/mitotic-specific cyclin-B2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30064 lncRNA downstream 134209 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 233106 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 812596 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 846714 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 884106 18829865 ~ 18830087 (-) True G23854
TU30182 lncRNA upstream 73905 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 150062 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 493223 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 493223 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 493223 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007474 mRNA downstream 61350 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007475 mRNA downstream 91251 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007471 mRNA downstream 130966 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007470 mRNA downstream 201214 19482612 ~ 19512979 (-) True AMCG00007470
AMCG00007459 mRNA downstream 527101 19182599 ~ 19187092 (-) True AMCG00007459
AMCG00007479 mRNA upstream 6411 19724207 ~ 19751795 (-) True AMCG00007479
AMCG00007481 mRNA upstream 74904 19792700 ~ 19799752 (-) False AMCG00007481
AMCG00007480 mRNA upstream 82578 19800374 ~ 19818066 (-) True AMCG00007480
AMCG00007487 mRNA upstream 199305 19917101 ~ 19923149 (-) False AMCG00007487
AMCG00007485 mRNA upstream 207641 19925437 ~ 19929389 (-) True AMCG00007485
TU29846 other downstream 936555 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1655244 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3092288 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3391542 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 197350 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 613717 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 753315 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4253875 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4548028 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile