RNA id: AMCG00007478


Basic Information

Item Value
RNA id AMCG00007478
length 3149
RNA type mRNA
GC content 0.52
exon number 18
gene id AMCG00007478
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19780577 ~ 19792758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAACAATAACGTAGTGCGTCATCACGCTGCACGTAATTATCGCATCCGGGACCTTTCGGAGTTTCCATAATACCTTTTTCTATTACTCGCCCAGTTCATTCAGCGTTGCAAAATGGCGTCGGCAGCCATCCTTACGGAGACCAAGAAGCTTACAGATTTGCGCGTTATAGATCTGAAAACCGAGTTGAAGCGGAGGAACCTGGATGTAACGGGGGTAAAAAACGTGCTGATCGCAAGATTGAAGCAGGCGATCGAAGAGGAAGGCGGAGATTCCGATAACATTGAGATTTCGCTGTCGTCGGACACACCCACCAGGAAAAATGCCAAATCAAAAGGAAAGAAACCAGATACAGACACGGACACAACACTGGAGGAAGAGTCTTATTCCAAGgAAGTGGAAGATGAAGATGTCGAAAAAGATGTAACAGATACTGATGACGGTACTCGTGAAAATTCTAAACCCCTCCCTTCTGAAGATAGCCTTGCAGAGGCTGTACAAGCAGCTGCGAATGACAGTCAAGCCGCTGCATCCACTCAGGAAGTGGAGGATGATAACATTTCCGTCACAATCCAGGCAGAAGATGCCATCACGTTGGATGTTGATGGCGATGACCTCCTGGAAACAGGTAAAAATGTGAAACTTCCAGATTCAGAGGCAAACAAGGGCTGTGACGAGCCAGAGGCCTCTGCCCAGATGAACCAGGAGGAAGACAAGAAAGACGAAGCGAAAGAGAGCCATAAAGATGGTAAGAAAGATGACGGAGTGAAGACTGATTCTGCGAAGAAGGAAAGCAGAGAGGCCTCGAAGAAAGCTGAATTTGGAGACAAAGACAAGGATTCTGGGAAGAAAGGCCCCTCATCTACTGGGGCATCAGGTCAAGCAAAGAGTTCTTCAAAGGACAAAGATGGAAAAACTGCTGCCAAGGATGAAAAAGGAGGCACGAGCAGTGGTGGCAGCAGTGGGAGCACTGGTAGCTCATCCCGCAACCTGTGGGTGAGCGGCCTGTCGTCGAACACAAAGGCGGCCGACCTGAAAAATCTGTTTGGGAAGTATGGGAAGGTCAAAAGTGATCCGTTCAAAAAGGAATTTTCTAAAAAGGAAGGTGAAGAGAAAATGTGTTCCAGCAAGACATCGGGAGAAAAGAGGACCATGACTGGGGTCAAAGCACCAAGCAAAACTCCAGTATCTtccaagaaagaagaaaagaaatctGAGAAACCATCTGATAAAGAGAGCAAGGAAGCATCCAAGAAACAAGAGTCTAAAAGTGTGAAGACAGACACCACCACATCGGGGTCCAGTCAAGATTCTTCCAAAAAGGACGACAAGAAGCATGGCCGCACCAAAAGCCCCGGCAAGATGGTGGTGATCGATCAAACGAAAACGGACCCCGGCTTCAGTAAAATGAGACCGCCGCTGAGACGAGGGAGGTTTGATAAGATGGAAATGTTAAGGAACAAAGGGAGGATCTTACCGAACAAAGGAGGGAAGAAAGACATCTTGCCCTTTGAGAAGATGAAGGAGCAGCGAATGCGGGAGAGGCTCGTCCGGTTGGAGCGTGTCCGGCGGGCGATTGAGCTGCGGAGACGGCGCGAGATTGCGGAGCGAGAACGAATCCACCTCCTCCGAGAGAGGGAGGAGCGGGAGCACTTGCAGCGGGAGCGAGAGCGGCTGGAGATTGAGAGGCAGAAGTTGGAGAGGGAACGGATGGAGAGAGAGCGGCTGGAGAGGGAGCGGATACGTATCGAGCAGGAACGGCGTAAGGAGGCAGAGTGTATTGTCCGCGAACGGGAAGAACTCCGACGCCAACAAGAGCAGCTTCGTTACGAGCAAGAGAAGAGGAACTCCCTGAAAAGGACTCGGGATGTAGACCACAGGAGAGATGACCCATACTGGAATGGAAACAAGAAACTCCAGACTGACTCCGATGGTCGCCTGAGTCATGGCTCAGACTGCAACCGACCTCCGAGCCGCTTCCATGAGTTCAGCcccagagagaggggcaggTTCCCTGAGGGCTCTTCAGCGCAGCCCTCCACTTTTGAAAGGCGCAATCGGTTTGACAGTGAGGCAGATGTGAAGAAGCCCCGCCCCCCTGCCCGCAGGGACAGTTCAGGCTTCGACAGGTATCCCAAGAACTACGACGGCGCTAGGAGGCCCGAGCAGCCGCGCGCAGAGATCCGAGACACGGACCGCAGAGAGATCAGGGACCGGGATGAGAGGAGGACGGTCACCATTCCAGAGGGGCCCACGGGCAGCCGGGGGATTCCTGACCGGGCCAGGATCGAGGAGCTGTCACACAGCCGCTCTGCCCGCCACTCTGGGCACGGGGGCTGGAAGGCGGAAGGAGGGCTGGCAGCCAGCAAAGCAGACATGCGAGGAGCAGTGCGGATGCGAGCGGAGAGGTCGGGCAGGGAGGGCCCTGGGTCCAGCCTGCGAGGGGCTCCCTCGGCCAGCCGCGGACGATCCAGCTTCAGCAGCAGGGAAGGGGGCCGAGCCATGATGATGGGGGAGCAGCATTTTAGCGAGGGGAGGCAAGTGGTGGTAGAGCGGCACAGCCGAGACCAGGGCCCGAGGAAAGACTGGCATGGCCCGGGCTCACCGAGCACTGGCTTCCCTGACACCCACAGACTGGGGCACAGCCGGAGCATCATGGCCCAGCACTCGAGCCATTCTTCACCAGGGATGAACCGAATAGTACAGATTACCAACAGTTCCCTCTCGGGAGGAAGTGGGACAGGATTCAAGCCTTTTAAAGGAGCTCCAAGAAGATTCTAACTTCTGTGCTCGTGACATCTGCCAGAGCAATGGGAAGTCTTCGTAAAACTTCCAAGATTAAACTTTCTTTACATCaatcttttttatattaagaattttatttttttgttggaaTTTTTGGGTAgattcccccccctccccccctccttgGCTGGATTTTCCTATGGCACAAAAGTGAAGTAGTGTTTACCAACAGTTTGATGTGATCAAAGTATGAACCCATGTTCATGCACATACATGTTATAACATCTGTTCAAATAATGTACAgctttagtttttatttgtaatgaagtTTCATATATATGGTTTCAAAGATTGCcttttgtcctttaaaaaaaaaaaaagtactctTGTACTGTAAAGTGGT

Function

GO: NA

KEGG:

id description
K25093 SLTM; SAFB-like transcription modulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30112 lncRNA upstream 129703 19650656 ~ 19650874 (+) True G24040
TU30099 lncRNA upstream 149970 19629304 ~ 19630607 (+) True G24030
TU29917 lncRNA upstream 668252 19106088 ~ 19112325 (+) True G23891
TU29902 lncRNA upstream 696964 19080082 ~ 19083613 (+) True G23886
TU29919 lncRNA upstream 728964 19050977 ~ 19051613 (+) False G23893
TU30167 lncRNA downstream 6727 19799485 ~ 19799952 (+) True G24083
TU30169 lncRNA downstream 10095 19802853 ~ 19803466 (+) True G24085
TU30172 lncRNA downstream 23037 19815795 ~ 19818345 (+) True G24088
TU30211 lncRNA downstream 151121 19943879 ~ 19949591 (+) True AMCG00007483
TU30260 lncRNA downstream 269215 20061973 ~ 20091627 (+) True G24156
AMCG00007476 mRNA upstream 66474 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007473 mRNA upstream 177618 19592421 ~ 19602959 (+) True AMCG00007473
AMCG00007472 mRNA upstream 189677 19580414 ~ 19590900 (+) True AMCG00007472
AMCG00007468 mRNA upstream 301488 19463556 ~ 19479089 (+) True AMCG00007468
AMCG00007469 mRNA upstream 329108 19442457 ~ 19451469 (+) True AMCG00007469
AMCG00007482 mRNA downstream 88310 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007483 mRNA downstream 146412 19939170 ~ 19951428 (+) False AMCG00007483
AMCG00007488 mRNA downstream 186182 19978940 ~ 19992609 (+) True AMCG00007488
AMCG00007497 mRNA downstream 445081 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007495 mRNA downstream 475402 20268160 ~ 20275806 (+) True AMCG00007495
TU29920 other upstream 724444 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1210113 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1488239 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1572269 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1578617 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1267643 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2488942 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3396702 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4399463 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8291064 28083822 ~ 28094741 (+) True G25822

Expression Profile