RNA id: AMCG00007479


Basic Information

Item Value
RNA id AMCG00007479
length 2100
RNA type mRNA
GC content 0.64
exon number 12
gene id AMCG00007479
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19724207 ~ 19751795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCTGGACGAGGATGTGGTTGTGATAGAGGCCACCCCCGGCCCTCCAGTCAATGCCAGCGAGGAGATCAATGTCACCTCAACTGACAGCGAGGTGGAGATCGTCACTGTGGGGGACAGCTGCAGGTCACGGTCAACGGGCAACCACCCCCGGGGTCACTGGGGCCCCCCCTGCAGCTCCCAGAGCCGTGGCCCAGAGCCCAGAGGCCGCCACCGCCTGTCCACCGTCATCCAGCCGCTCCGGCAAAGTGCCGCCGAGGTGGTGGACCTCACCATGGACGAGGATGATCTCACAGTAGTGCCAACAACATCTGACAGTGGACACCCCCAGCTTGTCAGCTCCTCTTCCAACAATGCCTCTACCTCAGAGCAGCCCCCCGACGCCGCGCCCGGCCCCTCCACCAGCGCCCTCGACTCCCTGCCCGAGCCTCTGCTGGGGGGGGTGGCAGTGCACAGCAGCACCGCGGGCCCAGCCATAGGGGACGATGCCAGAAGAGGCTCCTCGGGGCTGGCCGGTGAGACCGGAGGCACAGCCATGCCCAGGCTGCCTTCCTGCTGCCCGCAGCACTCCCCGTGTAGTGGACCCTCGCAGGGCCACCTCCCCCTGAGCCACGCCCACTCCAGCTGCCTGCAGGCACAGCCACCACCCCCCCCTCCGCCGTCTGCACAGCTTGGACACACGCACCACTtccagcaccaccaccaccatcatcaccaccacgcgcccccgcccccacccctgCAGCCCTTCCCCGAGCCCAGCTGCCCCCTGGAGAGGCCTACCGCTGTGCCCGCCCCCTGCGGCCCTGTAAATGCATCGGGCAGCCAGTACCATGACCAGCAGACCCTGCCTGTGGATCTGAGCAACAGTGGTGTGAGGAGTCACGGAGGCAGCAGCTTCCACGGCACCTCAGCCTTTGACCCCTGCTGTCCAGGCTCGTCATCTCGCCCAGCAGTGTATAGCTCCCAGGCGGCGGCCGGGCCCAGCCAGCCGGTCACCACGGACGGCTACGGCTCAGGAATGGTACCCCAGCctcagccccagccccagctcTCCTCCTGCAGGCATTACATGCACCCCTCGTATGGTCCCCTGGCTCGATCTCTGCACCACCAGTCGTCGTCCTCCTGCCCCCACTCACACAGCAACGGCCCGCCCCCTCCACAGCCACCCTCCCAGAGTGATTATGTCATCCCCCACCCTGTGCACCCCTTCCACCCACCGCTGCCCTCCCACGCCCCCAGCCACGCTGTGCCTCCAGCCCCTCCCCCATCCCTACCTTCCCACCACCTCCCCACACCCACTGCCCCGCTGCCCCAGCACCTGCCCACCGAGCACCAGTCCCTCTCCCACCACCACATGTCCACGCTGGCCCCCGCAGTTCAGAGACTCCACCCCCACGAGATGCTTCAGAGGATGGAGGTACAGCGACGGAGGATGCTGCAGCACCCCACACGAGCACATGAGCGCCCGCCTCCCCACCCTCACAGGATGCACCCGAATTATGGCCATGGGCACCACATCCACGTCCCGCAGACAATGTCCACACACCCCCGGCAGCCAGACCAGAGGGCAGCCTGGGAGCTGGGCATTGAGGCGGGAGTGACGGTTGCCCCGTACCCTCCAGGCCATCTGCACCCTCATCTGCCTCACTACCACCCTCCCCCCAGGCTGCACCACTTCCCCATTGTCCCCTTCATGCATCCTGGTATGTCCGAGGTCACCTACCCACACATTAGATATATCTCATCCCGGATGACCGGATTTGGACGGACCTATGAAGATCTTCTGCATTTAGAGGAGCGATTAGGAAACGTCAACCGTGGTGCCTCCCAGGGAACCATTGAGAGGTGTACTTACCCTCACAAGTACAAAAAGAGAAAGCTGCACGGTAAACATGATGATGACGAGGGAGCAGAAGAAGACACTGAAGAGAAATGCACCATCTGTCTTTCTATACTGGAGGAAGGGGAAGATGTCAGACGCCTTCCCTGTATGCACCTTTTCCACCAACTATGTGTCGACCAGTGGCTCACTACTAATAAGAAATGCCCGATCTGCAGAGTGGATATAGAGGCGCAGCTCTCTGCTGAAAGTTGA

Function

GO: NA

KEGG:

id description
K10635 RNF111; E3 ubiquitin-protein ligase Arkadia

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30064 lncRNA downstream 144223 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 243120 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 822610 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 856728 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 894120 18829865 ~ 18830087 (-) True G23854
TU30182 lncRNA upstream 39906 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 116063 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 459224 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 459224 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 459224 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007477 mRNA downstream 6411 19714193 ~ 19717796 (-) True AMCG00007477
AMCG00007474 mRNA downstream 71364 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007475 mRNA downstream 101265 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007471 mRNA downstream 140980 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007470 mRNA downstream 211228 19482612 ~ 19512979 (-) True AMCG00007470
AMCG00007481 mRNA upstream 40905 19792700 ~ 19799752 (-) False AMCG00007481
AMCG00007480 mRNA upstream 48579 19800374 ~ 19818066 (-) True AMCG00007480
AMCG00007487 mRNA upstream 165306 19917101 ~ 19923149 (-) False AMCG00007487
AMCG00007485 mRNA upstream 173642 19925437 ~ 19929389 (-) True AMCG00007485
AMCG00007486 mRNA upstream 182341 19934136 ~ 19941835 (-) True AMCG00007486
TU29846 other downstream 946569 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1665258 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3102302 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3401556 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 163351 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 579718 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 719316 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4219876 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4514029 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile