RNA id: TU30182


Basic Information

Item Value
RNA id TU30182
length 5816
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00007481
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19791701 ~ 19799752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatttttattttattttttcctctctttggATCAGTATACAGTGACTCGACCAAACAGAGTCTTTCTAGTAGCAAAAACAGTAGTTGTGTTCAAGGGGCCAGTGTCTCCATGTTTGACTGTGTTGCCAGAtaaagcatgtgtgtgtttgagtgagtgagagagagaggtgggtaGGGGGGGGTGTTGAACCAGCCAGAATATGGGAAGAGAGAATATGGCATAAATTTGTACCTTTCAGCCCTGAGAGGATCAACCCACTGCCCTCTTTGTGGGAGTTGGGAGCAGACAGAACCCCTCTCTCGCTGTGACGTCTTGCAATTTCATCTGTATTCTTTGCAAAGGTTTTCTTCATTATGTTTACAAGTTTGTTGACACATAAAGGCTTCGGGAGTCTGTGTTGTCAGAGGGATGTGCTCAGGAGCCCGCTGAGTGACCGAGTAATCCTAGGTTGCTGAGGATGCAACCACAGCCCCGCCCCCCCAACTCCTCTCTGTGTGCTGCACTCTGAAATGACTATACGGGCATTAATCTCAACCCAGTTTTACAATCTATACCTAACCCAGTTTTGCCTTACTAGGACATACACACTACTCTAACGCTTAATGTCCCAACAACTATTCTACATGTgagtgtgcatgcgtgtgtgcgcGCATCTGTGTGGGTATGTGTGCGTGTTGTGTGCGTTTTCTATAGTTGTATTACTATGTGGGTGAgttggcaaaaaaacaaaatagcactTATTTGTAGAATGATAGAGCAAAGTACAAATAAATCAGActtatctttttaaaaagggGAAACCAACACACGCTACATAGAGAAATATTATATACTAATATAAAGAGATAGAAGACATTGTTGAGAATGGTGAATAGCTCTCCCCACACTGGCTGAATTTATTGCTTCAGGAGAATCCCAGATAAATGAAAAATCGTCCCCTTGCAGTTAAACTCCAGCGGGCAGAAAAGACCAGGGCTGTTGTATCGCAGTCCGGGGCAGCTCAGGGGGTAGCAGAGAGGCTGTACCTCTGCAGAATCTGTGGGTCCGGACTCTCAGAGCTACGCCTTTAGCTTTAGTGACTATAAGTATTTACAGGTGATCTCTGCAGTGCTTTTCAATAACCCTGTTGCCTGCCCCTGGGgtaataattaatcaaacatgaaagcataaaaaacaaacaagtatacGGCAATGCTAGATTATATATTTGCTAGCAGGTAAAAGCTGCCCCTGCTGGCTGAAGCTCTGCAGAGGGATAGGGGCTGGGGAGCGGCAGTTCCTGTGATGCCCAGGTGGGGTCGTCTGCTTAATTCTCGCCTCCTGCCCAGTTGATCTGCTCAGCATGGCTTTgtgtggggaagaaaaaaatatcccCCTTAGTGTTGTCCCAAGTACATATACTATAGATAGATATACCCACACCACAAAGCAACTTCTGAGCTGAAGGGTTTGCTGTCTCCCTTGATCTTAATGGTACTGCCACTTTCTGAGAACGAATATTCTCAATGTATACATTCCAACTAAAATGCCTTTACTTACGcgaaaacatttttaacatgttgCCCTAGCACTCAGCCGCACTAAGGGAACTCACAGTAGTGGTTCACTGAAGGGATGTTATCTTCTTGTGACTTTTGTATTgagcactgtatttatttaaactgtgtaaagTGTAGTAATCCCTTGACGCCtaatttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaaaaaGAAACGGAAAGCCTTACAGAAtaaccagattttttttttttttttctttgttgagaagaaaaaagtataatcTGCTTAAAGGACAATCTGTAGATTTCAACTTAAACATCCGAAGTACAGCCACGTCTCAGGCCTTTCCAGAAGGGATGTACCAATTAGCGACCTTCCGCTCCATGCGTACTTGATGCAGCATCTTCAGTAGAGAAACGTGTTCCTCCTTTGGCTGCACACTACAGAGGTGGAGTTGAAGAAAAAACGAGAGAGAAGAAATCTCTTTGTTCATGTTTGttgattttcattgttttgtgcaGAGGCTTGCATATTGTATGTTGGTTCATGTAGGAtgcatgtttgcatttgtatacCATGTTACAATGTTACAGTGTTAGCGTCACAGCTTAATGACTGTTTCTTTTTGTACTTGCAATTGAATATTACAAACGTAGTGATGGCTTCGAGTTTCAAAGGACTGCAGAGTATAGTGGGGATAAGGCCACATGTACCTGGTCAGATAATGTAAGCAACAAGGATTTTGCAAGGATGGAACTTGCTGAACACCTAAAAAGTGTACTGATGCATTTATGCTCCGTTTTTATAGTCTGAATATACTAAAAGATAATCAActtttatatattaatcattgCGAATTTCTTGTGAATTTGGGAGCTTTGTGTTTTAAAGGGAACTTAATTTCCCTTGAACAaatgcacatacatatatatcatgTATTTAGAAAATCTAGTAATGAATCACTTAATGGCATTCTAATTTGATGAGTAGCGTGTAGGCCCCTATTGTGACTTTTGAGAGCTCTGGCGTTAGCTGTGGTTAATACTTAGGATGGTCAGCTGATCATGAAAATGTGCATTGGTTAAAATACCTTGTAATATATAGATGTTCACAAAGAAACTgccaaataatatttttcacagGCTATACAGAACTCGAGCCTGGACAATGTGGATTCTGGACACTTATTGTATATATGTGAGTATTTACTGTGACTTTAGATCGAGTAACAAAGTTGTGAAGTAACACTAAATATTCTTAACATCTAACAGAATGCATGACTTCAGTTTCACTTAAAATTCATGTATCTCCCAATactcaaaattacaaaaagcaaaagggacattccagtttatttatattagcTATACTAAGAAGGTATGGCTCTGTGTTCTGTATCAGATCAGTAGGTTGAGATTGATGTTACTGAGCAAAAACAATGTAGGATTGACTGAAATTGGTGTTGTACAATAGATCTGTGTATCAGAATACAGCTTTTCAGGTACTGTTCATTAGATTGCTGTTTTACCTatagattaaaaacaattgtaacCTGGGGTTTTATTATCCTTCAGAGATTTTGTGTCTTGTAGCCCTGTCCTCTTTCAATATTGATGTGCAGGGTTGTGGCTATCAGTGGAAGAGGGCTGTAGACCTGCAGAACTGATTCAGGATTTGGGGGAAATGTACAATTATAGGTGTTGAACTACAAAAGGCAATCCTTGAAAATTAGTCCTTGTAATGCTTTTGCACTGTTACATGGATATGCACTAGAAAAAAAATACCTCATTTTATACAAAGTTGTGCAAGAGTACTTCTGTGCTCGAGGGTACCTTATCAGAAATGCAATGCAGTGCGCCCTGTGGCTCGTAGCAGGAGGGGACTGTACCCTCGCCTACTGCAAGAGTCGCGGCACTGCCTGCTTTAGTTTGCCCGACAGGATGGACACTCAAGCGATGCATTTTAAACGCTAAAAGGAAACAGAAGGCTGTGGGTCGGAGACTATCTTATCCAAGTGTCTGACACTAGGAATAATTATAAAAGTGTCCTTTGAAAGGGCAGGGATCTACGAACAGTGCGGCAGAGACAGCTTCTTCACAGAAACGGTGAAATAGTGGGCCAGAGCAGAAATCCATTCTATGAGGGAGTATGTTGCGATTGTCTTTTATTCGCTTCACAGTTTAGATGCAGTGAGTCCAAGTATTTATATTTGGCGTTGAGGCACACGGGGCTGTGCACCCTGTCAGTGAAGGATGTTGAGCAGGCTAGGATTGTGGGAATGTAACACATTTGCCTCCCCCCGCATTtctcaatgtttaaaatatggcTAGttgatttaattgcatttgcttGGAAACAACGCATGTTAATTGTGGTCTAgccaacattatatatatgtttttctttttaaaagcatttccttAGTGAATACAACTAATCTTTAGTATTGAATGTAAAATTAGGAAAGCTAAAAGTTTTGTTGCCCCTCATGTTTAAAACTAAACTGTTATAACACTAGCCCATGAGCACTACCACTACAAtgcatcaaaaaacaaatacagcaaaaaCGTATGCTGCATTCATGTACATAACATTGGATATAGGATTGTAAAACTAATTTAGCAGAGACAAAGTGCAAGTAGTCCATCATGGGTAAAACAGTGCTTGAGAAGGTTTATCAGAATTAATACTTGTGACCAAATGTGTGCAGCTTCTGTTCTGTTACAAACCATGTTGATGTAAATATTCTTCACACATTTATGTTTTCCCCCATCATTTGCAATCTTAGTTGGTAACAAAATGCCTTAGTAGACAATGGGCATTTTAGCcctatacaattatataataaaatctatagagaaaaacaaatgagatgCCAGATGCATTCTTTTTACCTCCAtgcagttgtattttatttgtgtaattctGGAGAGAAACAGCCTATCATGCCATTAAATTTGATTTACTCACAGATGTGCTTCagtaataaatgtaatgctttgagTATTGTGTGTGGCAAATCTTATATTTCATGTAGGCTGAGAGGGTAGAGTAGGTGACTGCAGGAGTCTGTTGCTGAAGATGGAAATAAATTCTGGATCATTAACCGCCCTGCTCAACCTTCCAGTCCAGAACTGGTGATGTTACTTGAACAAATGTGATGATTATTTActtccaaataaacaaaccagaccacatatacacaacaaaactaaatgtacaatgaaatgtacaatttattGTAAAGAATGCAATTTTGCAATCTTTGAAACCATATATATGAAacttcattacaaataaaaactaaagcTGTACATTATTTGAACAGATGTTATAACATGTATGTGCATGAACATGGGTTCATACTTTGATCACATCAAACTGTTGGTAAACACTACTTCACTTTTGTGCCATAGGAAAATCCAGCcaaggagggggggaggggggggaatcTACCCAAAAAttccaacaaaaaaataaaattcttaatataaaaaagattGATGTAAAGAAAGTTTAATCTTGGAAGTTTTACGAAGACTTCCCATTGCTCTGGCAGATGTCACGAGCACAGAAGTTAGAATCTTCTTGGAGCTCCTTTAAAAGGCTTGAATCCTGTCCCACTTCCTCCCGAGAGGGAACTGTTGGTAATCTGTACTATTCGGTTCATCCCTGGTGAAGAATGGCTATGAAAACAAgataagcttttaaaataacatccagCAAGGCTGACCTCAGGTtttcaaaggaagaaaaaaataaataaaaccaaaaaaaaaaaaaaacccagcaACATTCACTCTgctaaaactgtataaaactaTACTTGAGCAATGAGATCACTGAAATGAAGTCAAACTGCTGACACCAGCGTTCAAGACTGCTGCTTTACTCCACCAGCTGACTGGCGTTCACAGACCTACGTTTTTAATATGGGCTTTATTAGGACGCGATTCCGACGTGGCTCAGACATGCGGTTGTAACTCTAAATCGGGCTCAAGGAGggcattttcattaatttacaaaagGTAAGGTAGGCCATTGGTTTACAATGAGCAGCAGATGGGGCAGAGCGGTGACAGAGGGAGCACAGAGGCGGGCGGGACTGTTCAGCGCCTCTGCGGCTCGTACCTCGAGTGCTGGGCCATGATGCTCCGGCTGTGCCCCAGTCTGTGGGTGTCAGGGAAGCCAGTGCTCGGTGAGCCCGGGCCATGCCAGTCTTTCCTCGGGCCCTGGTCTCGGCTGTGCCGCTCTACCACCACTTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30064 lncRNA downstream 211717 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 310614 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 890104 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 924222 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 961614 18829865 ~ 18830087 (-) True G23854
TU30194 lncRNA upstream 70282 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 413443 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 413443 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 413443 20211019 ~ 20222004 (-) False AMCG00007494
TU30336 lncRNA upstream 490947 20288523 ~ 20288842 (-) True G24213
AMCG00007479 mRNA downstream 39906 19724207 ~ 19751795 (-) True AMCG00007479
AMCG00007477 mRNA downstream 73905 19714193 ~ 19717796 (-) True AMCG00007477
AMCG00007474 mRNA downstream 138858 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007475 mRNA downstream 168759 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007471 mRNA downstream 208474 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007480 mRNA upstream 2798 19800374 ~ 19818066 (-) True AMCG00007480
AMCG00007487 mRNA upstream 119525 19917101 ~ 19923149 (-) False AMCG00007487
AMCG00007485 mRNA upstream 127861 19925437 ~ 19929389 (-) True AMCG00007485
AMCG00007486 mRNA upstream 136560 19934136 ~ 19941835 (-) True AMCG00007486
AMCG00007484 mRNA upstream 146279 19943855 ~ 19957453 (-) True AMCG00007484
TU29846 other downstream 1014063 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1732752 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3169796 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3469050 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 117570 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 533937 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 673535 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4174095 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4468248 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile