RNA id: AMCG00007483



Basic Information


Item Value
RNA id AMCG00007483
length 1071
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00007483
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19939170 ~ 19951428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACTGACGGAGCAGTAGCCCAGCTTCAGCAGGGTGTCCCCGAGGCAGACCCCCTGCCCTGGGCTGTAGCAGCTCACCACTTTCTGGTAGAATCGGGCGGCCTTGGCGTACTCCTCCATGTGGTCGTAGGCAATGGCGATGTTGAAGTGCATGTCAGCGTTCCTGTCCTCGGGATCCATGAGCTTGCACTTCACAAAGCACTTCAGGCCTTTCTTGGCATTGCCTGCCGCCACGTAGGCTGCCCCCAGGTTGAACAGACACATTCTCTTGGCTCGGCCTTCCAGCAGCTTGCAGGACAGCAGAAAGGCCTTCTTGAAGAGGAACAGGGCCTGGTCCTGCCGATCATCCTTCATTGCCTCCTTGCCAGCCCTGCCAGCGAAGACCAGCCTAGTCGCTGCTGTGAAGGACTGCCGTCTGTGTTGACAGCCGCCCTGGAGACGCTGGTGAGGGTGTACAACCTGGGGGCGCAAGACTTGGCACACCCAGCACTGGGACGGTGTTTCTGCGGCTCAGTGTGGTGTAGCTCGATGAAGAGCAGGTACAGCACAGCTCCCACGATCCCCCCCACCAAGGGCCCGGCCACGGGAATCCACCACCAGTTATTGCCAGCACTGGCGAGACAGGAAGGGATGCCACCATGGGAACAGGAAGTACCATCCACGCATGCACGACTACAGTCTGGGAAAACACTGTTCAATCAGTCTGCCAATATTGAGCTGGATTATGGGAGGTTGAGAGCTTGGGATGGAAGGCAAAACCTGAGGACACCGTGGCCCACCACATCACTACAGTCCCACTCAGCCTGGCTTGGCTGGAGAAGAAGCAGGATGTGGAGGATTCCTTGGTGGGACACTTTTGTACTCACCATAGTAGAGCCCGTACACGGCGGCCGCTCCAGCAAACGCCCCAAGAAACTGGGCCACTACGTACACTGGGAACTTCACCAGCTTCAGCTTGCCCAGGACcagcatggccagggagactgCTGGATGCTCTCTGTAGCTCACTTGCCAGGTCAAGTGGAAGATGTGGTCTCCCTGGCAGTGGTCCGGTCAGCCACAGTTCGATGGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU30172 lncRNA upstream 120825 19815795 ~ 19818345 (+) True G24088
TU30169 lncRNA upstream 135704 19802853 ~ 19803466 (+) True G24085
TU30167 lncRNA upstream 139218 19799485 ~ 19799952 (+) True G24083
TU30112 lncRNA upstream 288296 19650656 ~ 19650874 (+) True G24040
TU30099 lncRNA upstream 308563 19629304 ~ 19630607 (+) True G24030
TU30260 lncRNA downstream 110545 20061973 ~ 20091627 (+) True G24156
TU30271 lncRNA downstream 153292 20104720 ~ 20105070 (+) True G24167
TU30321 lncRNA downstream 304718 20256146 ~ 20256402 (+) True G24202
TU30324 lncRNA downstream 313965 20265393 ~ 20265614 (+) True G24205
TU30335 lncRNA downstream 385893 20337321 ~ 20339803 (+) True G24212
AMCG00007482 mRNA upstream 29058 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007478 mRNA upstream 146412 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007476 mRNA upstream 225067 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007473 mRNA upstream 336211 19592421 ~ 19602959 (+) True AMCG00007473
AMCG00007472 mRNA upstream 348270 19580414 ~ 19590900 (+) True AMCG00007472
AMCG00007488 mRNA downstream 27512 19978940 ~ 19992609 (+) True AMCG00007488
AMCG00007497 mRNA downstream 286411 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007495 mRNA downstream 316732 20268160 ~ 20275806 (+) True AMCG00007495
AMCG00007496 mRNA downstream 374048 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007499 mRNA downstream 419786 20371214 ~ 20385040 (+) True AMCG00007499
TU29920 other upstream 883037 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1368706 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1646832 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1730862 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1737210 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1108973 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2330272 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3238032 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4240793 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8132394 28083822 ~ 28094741 (+) True G25822

Expression Profile