RNA id: TU30211


Basic Information

Item Value
RNA id TU30211
length 1756
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00007483
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19939170 ~ 19951428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CcacattttaatgatgtattttCAGTCATGTACACATTTGTCATAGTATTTCTCATGTTTGTATCAGTATACCAAGAACAcatacaatttataaaatattttaataaggacaacagggaaaatattttcattaagaCAGACAtaactatatctatatattactATATGTAAACCAGTattaatataatgcattatCTACATACTTAGCTTtcatttcataattgttttgaaCAAAATCTGCAACATAAACAACAGTATGGAAAGTAAAGCAACAGAAAAGACAATTATCAATGAAAGTGCCTTTGCCTAGGAAGAGAAACAAGGATATAACAGTAACAACataaagagtaaaaaaaaatcaagaacaaTGTTTTTGCCTGGATAAAAGAAGCAATTACTAAACACaacacattcattaaataattgaattacataACAAACCCACAGTGACAGAGAAACTGTGCTACAGAGCAGCTATCTACCGTGGCAAGATACTTATTTTACACTTATGTCTATCCCTTTCTATGAACTGCATACTCAATGGTTTGTCTGAACCAGGAGGATTGAAAAGCTGGCAGctagtgttttgtttctgtttgtttcatgATGGTATATACTTTTTGTGCTTCCTACCTAGCACAACTGCATAACACATTATCTTACATAGAAAAGTGTTAGTGAAGATCTGTACTGATAAACCTAATGCATGTTAAGGCTGATTtctgtaagaaaaaataaagaaaaaaatgctgtgcaTGTAGATGTATTCGTACATGCGTGTGCAATCATCAGGTCAACTGTAAATACAGACTCGGTGTTCATATTCTGGACATTAAAACTGAACATAGAACAGTAAAATATTCATGGCGCATGTGAAGGATGGTGGAGAAAGTGTTCACTCTTTAAAGGCATACAGCATGCTATTagtgtacattttcattatggCTCTCAATTTTAGGAATTAAGGAAGCCATCTAGGGCCAGGATCTTGGCTGCCTTGACACTTCGTGCTTCCCTGAGGGGTTTTGGTTGACAAATGTGGTGATGCTGTTCAGTAAAGGGCTAGGAGGGTTATACCTCATGTTTTCAGAAAATTAAAGGTTAGAACCTCACTCTAGAAAGCTTAATAATGGTATTCCCTGTGTACAGCTTCACATGCTAGAACTCTCTGCATATACGAAGAATGAAAAtctacaaaaaagtaaaaaagtgattttgtttgtgtgaaagtgtgttttgTACTGAGGGGCTTGGTCAGGGTTGTGTTTAGATGCCTTTTCTCATACATCATGTTCAAGAAGCACCAACCCTCAGAGAGGCCTGTCTGAGATGGAAGTCCTTGGGTCTAAGTTAGCAGTGCTGAGACATGCGGTGGCCTGGGGGGGGGTCAGGGAGCCCTGTAGGGCCTTAACTCATGGTGATCATTTCGTACTTGTCCTTGACGTTGTTCTCCTCCTCCAAGTGTTTCTGCGGCTCAGTGTGGTGTAGCTCGATGAAGAGCAGGTACAGCACAGCTCCCACGATCCCCCCCACCAAGGGCCCGGCCACGGGAATCCACCACCAGTTATTGCCAGCACTGGCGAGACAGGAAGGGATGCCACCATGGGAACAGGAAGTACCATCCACGTCAACACTTACCTGATCGATGAAGCCATTCAGGATTGACAGATGTCTTCCTGGGTACGAAGCAAAAATCTGTGCAGTAGCATTGGGGCCAGTAACAGTCAGAATGCCGTTGGTATAATCCATAAAGGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30172 lncRNA upstream 125534 19815795 ~ 19818345 (+) True G24088
TU30169 lncRNA upstream 140413 19802853 ~ 19803466 (+) True G24085
TU30167 lncRNA upstream 143927 19799485 ~ 19799952 (+) True G24083
TU30112 lncRNA upstream 293005 19650656 ~ 19650874 (+) True G24040
TU30099 lncRNA upstream 313272 19629304 ~ 19630607 (+) True G24030
TU30260 lncRNA downstream 112382 20061973 ~ 20091627 (+) True G24156
TU30271 lncRNA downstream 155129 20104720 ~ 20105070 (+) True G24167
TU30321 lncRNA downstream 306555 20256146 ~ 20256402 (+) True G24202
TU30324 lncRNA downstream 315802 20265393 ~ 20265614 (+) True G24205
TU30335 lncRNA downstream 387730 20337321 ~ 20339803 (+) True G24212
AMCG00007482 mRNA upstream 33767 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007478 mRNA upstream 151121 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007476 mRNA upstream 229776 19666801 ~ 19714103 (+) True AMCG00007476
AMCG00007473 mRNA upstream 340920 19592421 ~ 19602959 (+) True AMCG00007473
AMCG00007472 mRNA upstream 352979 19580414 ~ 19590900 (+) True AMCG00007472
AMCG00007488 mRNA downstream 29349 19978940 ~ 19992609 (+) True AMCG00007488
AMCG00007497 mRNA downstream 288248 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007495 mRNA downstream 318569 20268160 ~ 20275806 (+) True AMCG00007495
AMCG00007496 mRNA downstream 375885 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007499 mRNA downstream 421623 20371214 ~ 20385040 (+) True AMCG00007499
TU29920 other upstream 887746 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1373415 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1651541 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 1735571 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 1741919 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 1110810 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2332109 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 3239869 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 4242630 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 8134231 28083822 ~ 28094741 (+) True G25822

Expression Profile