RNA id: AMCG00007484


Basic Information

Item Value
RNA id AMCG00007484
length 2551
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00007484
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19943855 ~ 19957453 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCAAGCTCAGTTTGCGTTAACAGGAAGGCATCTTTAAGCAAAGAAAGGAAATTGTCATCAGAACAAAGCTAATTGGGACGTGTTCTGGATACCAGTATAATGAACTAAATTGATCCCCCTGTCCCAGCAGCTCCTTGTGCGGCGAGCTCCCCGGGAGGAGGAGGGCAAGGGGGGTACAGGGATCGACCCGGGACGGGCCAATGCCAACTAGTGGCTACAGACAAACCCCTGTGAGGGCTTAAATGCGGAGCAGCTACACAGACGAGCCCTCACAGCTCTTCACAGCTCTGTCCTGTAAGGAGATCAAGTGAAAAGGCTGGTTAGGGAAAATGGAGAGGAAAAATAAGAGGAACCTGAAGGAGCGATTTGCCATGAGAAACAGCATCGTCAAGGAGGCTTTGGCAGAGTTTCTGGGGACATTCGTGCTCATTCTCTTTGGCTGCGGGTCGGTGGCCCAGACGGTTCTGAGCCGGGGGGCTCATGTTAACCCAGcagtctccctggccatgctgGTCCTGGGCAAGCTGAAGCTGGTGAAGTTCCCAGTGTACGTAGTGGCCCAGTTTCTTGGGGCGTTTGCTGGAGCGGCCGCCGTGTACGGGCTCTACTATGatgCCTTTATGGATTATACCAACGGCATTCTGACTGTTACTGGCCCCAATGCTACTGCACAGATTTTTGCTTCGTACCCAGGAAGACATCTGTCAATCCTGAATGGCTTCATCGATCAGGTCATAGGTACTGGTGCCTTGGTTCTCTGTATTCTGGCCATCTTGGACGGAAAGAACATTGGGGCCCCCAAAGGCATGGAGCCCCTGGTGATTGGCCTGATCATCATGGCTATCGGCGTCTCCATGAACCTGAACTGCGGATACCCCATCAACCCCGCCCGTGACCTGGGGCCGCGGCTTTTCACCGCAGTGGCAGGGTGGGGCACCGCTGTCTTCAGTGCTGGCAATAACTGGTGGTGGATTCCCGTGGCCGGGCCCTTGGTGGGGGGGATCGTGGGAGCTGTGCTGTACCTGCTCTTCATCGAGCTACACCACACTGAGCCGCAGAAACACTTGGAGGAGGAGAACAACGTCAAGGACAAGTACGAAATGATCACCATGAGTTAAGGCCCTACAGGGCTCCCTGACCCCCCCCCAGGCCACCGCATGTCTCAGCACTGCTAACTTAGACCCAAGGACTTCCATCTCAGACAGGCCTCTCTGAGGGTTGGTGCTTCTTGAACATGATGTATGAGAAAAGGCATCTAAACACAACCCTGACCAAGCCCCTCAGTAcaaaacacactttcacacaaacaaaatcacttttttacttttttgtagaTTTTCATTCTTCGTATATGCAGAGAGTTCTAGCATGTGAAGCTGTACACAGGGAATACCATTATTAAGCTTTCTAGAGTGAGGTTCTAACCTTTAATTTTCTGAAAACATGAGGTATAACCCTCCTAGCCCTTTACTGAACAGCATCACCACATTTGTCAACCAAAACCCCTCAGGGAAGCACGAAGTGTCAAGGCAGCCAAGATCCTGGCCCTAGATGGCTTCCTTAATTCCTAAAATTGAGAGccataatgaaaatgtacactAATAGCATGCTGTATGCCTTTAAAGAGTGAACACTTTCTCCACCATCCTTCACATGCGCCATGAATATTTTACTGTTCTATGTTCAGTTTTAATGTCCAGAATATGAACACCGAGTCTGTATTTACAGTTGACCTGATGATTGCACACGCATGTACGAATACATCTACAtgcacagcatttttttctttattttttcttacagaAATCAGCCTTAACATGCATTAGGTTTATCAGTACAGATCTTCACTAACACTTTTCTATGTAAGATAATGTGTTATGCAGTTGTGCTAGGTAGGAAGCACAAAAAGTATATACCATcatgaaacaaacagaaacaaaacactagCTGCCAGCTTTTCAATCCTCCTGGTTCAGACAAACCATTGAGTATGCAGTTCATAGAAAGGGATAGACATAAGTGTAAAATAAGTATCTTGCCACGGTAGATAGCTGCTCTGTAGCACAGTTTCTCTGTCACTGTGGGTTTGTtatgtaattcaattatttaatgaatgtgttGTGTTTAGTAATTGCTTCTTTTATCCAGGCAAAAACAttgttcttgatttttttttactctttatGTTGTTACTGTTATATCCTTGTTTCTCTTCCTAGGCAAAGGCACTTTCATTGATAATTGTCTTTTCTGTTGCTTTACTTTCCATACTGTTGTTTATGTTGCAGATTTTGttcaaaacaattatgaaatgaAAGCTAAGTATGTAGataatgcattatattaatACTGGTTTACATATagtaatatatagatatagttaTGTCTGtcttaatgaaaatattttccctgttgtccttattaaaatattttataaattgtatgTGTTCTTGGTATACTGATACAAACATGAGAAATACTATGACAAATGTGTACATGACTGaaaatacatcattaaaatgtgGCATCTCATTGTCAGTTGAGTCCCA

Function

GO: NA

KEGG:

id description
K09877 AQP9; aquaporin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30194 lncRNA downstream 30939 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 146279 19791701 ~ 19797576 (-) True AMCG00007481
TU30064 lncRNA downstream 363871 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 462768 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 1042258 18901365 ~ 18901597 (-) True G23875
TU30293 lncRNA upstream 253566 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 253566 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 253566 20211019 ~ 20222004 (-) False AMCG00007494
TU30336 lncRNA upstream 331070 20288523 ~ 20288842 (-) True G24213
TU30339 lncRNA upstream 373247 20330700 ~ 20330902 (-) True G24216
AMCG00007486 mRNA downstream 2020 19934136 ~ 19941835 (-) True AMCG00007486
AMCG00007485 mRNA downstream 14466 19925437 ~ 19929389 (-) True AMCG00007485
AMCG00007487 mRNA downstream 20706 19917101 ~ 19923149 (-) False AMCG00007487
AMCG00007480 mRNA downstream 125789 19800374 ~ 19818066 (-) True AMCG00007480
AMCG00007481 mRNA downstream 144103 19792700 ~ 19799752 (-) False AMCG00007481
AMCG00007492 mRNA upstream 71679 20029132 ~ 20032795 (-) True AMCG00007492
AMCG00007491 mRNA upstream 77242 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007490 mRNA upstream 104479 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007489 mRNA upstream 154597 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007494 mRNA upstream 213876 20171329 ~ 20221934 (-) False AMCG00007494
TU30203 other downstream 20702 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1166217 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1884906 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3321950 16530174 ~ 16621905 (-) False AMCG00007375
TU29238 other downstream 3621204 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 374060 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 513658 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4014218 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4308371 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 5306879 25264332 ~ 25264951 (-) True G25422

Expression Profile