RNA id: TU30203


Basic Information

Item Value
RNA id TU30203
length 2226
RNA type TUCP
GC content 0.41
exon number 2
gene id AMCG00007487
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19915146 ~ 19923153 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGATGGTGCTGAAGTTCAAGTGGGAGGGCAACGCAGTGTGGGCGCACATCTGGAACAAGATGCAGACCATAATGCCCTGGAGGAAAGGACAGAGGGGACCGGAGCTGACTGTGGGCAAAATCCGGGTCAAGGCCGGGGAGACCCAGCAGAAgacGTCCTTCTGCTCCCAGAATGACGATCAGATGCAGTTGCAGCCGTCGCAGGAGAAGGTGTTTGTGCGCTGTGAGGGCAGGAGGGACGGGCACCGGAAGAGGAAAATCAgtgactgagacacacacatgctgaaACACACTGCCAGCACTGCGGCCTGGGCCACAGAaacatttacatgaaaataCAACCACTGGGCCTCCTGCTGTGGCATGTGCCAGGCTGTGGtgatcagatttttattttcttgctgagaatgtactttttgtttgtttgtttgttttgttgtctgtttgtcCCTTCCCCATAGCCCCCTGCCCATTCCCACACCCCAAGCAAAACGGCTTAAGACCTTGAAACAACTATATATTGTTTGCCGTTCAGACATTACTTCACCGACGTATCTGAGACCAAAGATTGACCGAAACTCAAGAAAAGACCTTGCAGCAGGTGGAATAGTGAGGTAAATGAACTCTGAGGTTGCAGGAGCTTCATTACACCAAGCGGTCTTTGCATATCTCCCCCTTGCAAAGACTACTgtacataatgcattttaagacACTGACAATTAACTAGGTGTTTTTTGCTGAAGTAGGTAACATTCCCTCCACttcaaaaaacattaatactCAACTTAAAAATGCTTGTGAATATATCTTCAAAGATAATTTGGATATTTCTTCCAATCTaactatttaatgtatttatctatggGAGTGCAGTGGACAGTAATACACCAGACTAATCCAAGTCATGAAGGCACTGTAGAGCCCAAGATATCTCACTTCACTAGTAACTGCAGCAATGGACGAATAATGATGCATTATACTTCCAGACATCTTTTCAAGGGATTTcagaatactgtatatatggtAAATTCTCAAATACCAAAATCATAACAGAGCAGTCATAAAGTTTCAAACTGCTTCAGAGAAGACAATGGCCAATCTCTCCACCTTACTGCGATATTCTGAACCAGACGGTGAGAGCCGTGGTgtggtaaaaacatggtaatGTGTAGCGCACTGTGGTAAAAACCTTGTAACGTGTAGAGTGGtgaattttgaattatttaccTTTGCTTAAGTTTCCATAGTTGCCAGCACAGTTTATATCGATATTAAACTGCCACAAACCCAAATTAATGATTACAAATgcctttatttgtaattataatatcaTGACTGTCAAACAAAGTACCTCTGTCCTTTCCATGTAACATAATGATTATGCTCTAAAGCAGCGTTCTGCAAGAAGACATCAGTGACTGGAAAGCGTGAGTAATACAGACTTAGTGCTCATCTCACCCGCTGTGCTCACTGCATCATGGCGAATTGGAGATCTGATAGTGTCTATTGGGTGACACACACAACCCCAAATCTGATAAACACCAagacactgaacacaaacacacaccaggTGATATGGGAAAAAAGAGGGTATATACTATGGGCCAAAGAAGAGGCTGCAGTACATCAGTCTCCCATGACACACTTCTGTCCCCTACAACATGCTCTTCACCTCTACATTGTACAACACTTGTGACACACTAACTGGTGTCACGTATCCAAGGGTGTTGTAGTCTGTATATGACAACTGGCAGTGTGCTGATCTCTCATGAGacttattagtctgcatgttaAAGCATGCAGTCTTGATCTCCTGGAAGATTCCTCTTCATCCGTTCGTACAATCACAATCCCACAGCTTGGTGCAAACTTGGTGCAGTGATTTACCCTAATACCTAGTACGAtgattgtgcgtgtgtgtttttttttttttttttttttttaataataacatgttcaataataaaaaacatgatgaaaaagcaaaaacatgtaattgaaaCCAATGGTGAAACATTCAGATACCCCTCCTCAGCGAGCACAATTCGTTCTCCTATGCAATGTTCACATGAGTATCTTCAGATGCTTCAAATTCTTTCTTTTGAGGCATGTGATTTTCAGCATATATCCATTTATGTTTTGTAGAGATGTCTTAAAACTAGAAAACtcgaaatgttattttttaatatttgtttctggAATCATCATGATTAGTTTCTGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30194 lncRNA downstream 2230 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 117570 19791701 ~ 19797576 (-) True AMCG00007481
TU30064 lncRNA downstream 335162 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 434059 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 1013549 18901365 ~ 18901597 (-) True G23875
TU30293 lncRNA upstream 287866 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 287866 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 287866 20211019 ~ 20222004 (-) False AMCG00007494
TU30336 lncRNA upstream 365370 20288523 ~ 20288842 (-) True G24213
TU30339 lncRNA upstream 407547 20330700 ~ 20330902 (-) True G24216
AMCG00007480 mRNA downstream 97080 19800374 ~ 19818066 (-) True AMCG00007480
AMCG00007481 mRNA downstream 115394 19792700 ~ 19799752 (-) False AMCG00007481
AMCG00007479 mRNA downstream 163351 19724207 ~ 19751795 (-) True AMCG00007479
AMCG00007477 mRNA downstream 197350 19714193 ~ 19717796 (-) True AMCG00007477
AMCG00007474 mRNA downstream 262303 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007485 mRNA upstream 2284 19925437 ~ 19929389 (-) True AMCG00007485
AMCG00007486 mRNA upstream 10983 19934136 ~ 19941835 (-) True AMCG00007486
AMCG00007484 mRNA upstream 20702 19943855 ~ 19957453 (-) True AMCG00007484
AMCG00007492 mRNA upstream 105979 20029132 ~ 20032795 (-) True AMCG00007492
AMCG00007491 mRNA upstream 111542 20034695 ~ 20053654 (-) True AMCG00007491
TU29846 other downstream 1137508 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1856197 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3293241 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3592495 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 3592495 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 408360 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 547958 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4048518 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4342671 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 5341179 25264332 ~ 25264951 (-) True G25422

Expression Profile