RNA id: AMCG00007490


Basic Information

Item Value
RNA id AMCG00007490
length 6020
RNA type mRNA
GC content 0.48
exon number 21
gene id AMCG00007490
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20061932 ~ 20100721 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCCGCGGATGCCCTGCGAGGGGAGAGAGCTGCCAGAGCCGCCGCACAAAACAACAGCGCTGACGGCTTCACACAGACCTCCAGCATGGGCCTGCAAACTTGCCCTTAAACCCCGGGATTTTATTGCCATATGAGCGTGTGTGCAGCTTAACAAACGGCTGAAAACCTTTCCAGAGAGGAGGTTTTGCAATGGAGTCTTACAGGGTTGGTGGCCTTCCAGATGCCCGCTTGCACCAAGATTACATGCACTACGACCGCTCTTCAAGATCTCAAAGCAGTGGAACTGGAACATATGGGGTCAGCATTAGGGTTCAGGGAATCGATGGACATCCCTATGTGGTGCTTAACAATGGAGGGAGAGATCCCCAGCCCTATGGGTCAGAGAATGGCTTCCCCAATGCCTCTAAAGATCCGGATGGTTCCTTTATCGATCATTACCAGGAGTATGATTTTAAAGGGGGGAGCACCTCACGTGCAGAGAATCCTTTCGTGGAGTATAGGTCACAGAAGCAAATGTCATTCAGTGGGTCACACAACGGAGTCACCGAGTTCAAAGAGTCGCCCAGAAAGACATCCACCCTTTTGAATTTTCAGAGGCACCCCGAAATCCTAAAACCGTACGACCCCGAAAGTAACACTTTGAATTTGGAAACATACAGCAGTCTCCCAGTAAGACCTGCCTCCCTGGCGGATAAGGGAAACACGTGTGCAGGTTCCATTCCTAGGGTTTCCTCCCCATTAAGCTCCCGAGGTCGGTCATCCAGCACAGAGAAGCCAAAACTAGACAGCAAGACTTTCGCCAATCCCAGTCCACCGACGCAGCAGGAGAAAACTGTGCCTCAGTCTCCCGGTCTGGCGAATGTGTCCTGCGAACCTCCGAAGTTTCCAGGCGAATCCCCGGGATCTGTCAGCAGCAGCAATTCCAGTCTGGAGCGTAAGAGGCTCGGCCCTGACGTGCTCCCTCTCCGCCGGCATGATTCCAGCGGCCCGGTTCTGGAGTCCACAAGGTCACGGAGGTCATCTAGCTCCTCGACCACTGCCACTTCCCTGACATCCTCCAGCAACAGGTTCCTGCAGGATGAGCAGGAGGATGCCTTGTACGCTGAGAACATCAACCGGCATGAAAACAGGAGGTACATCCCCTTTGTGCCGGGCACAGGCCGTGACATTGACACAGGCTCCATCCCCGCCGTGGACGAGCTCATCGACAAGTTCGATGGGAAGGACAGCCCTCAAAGGAGGGGCCGGGctgggaggaggaacaggatcAACCCAGAGGACCGCAAGCGCTCCAGGAGTGTGGACAGTGCCTTCCCTTTTGGCATGAGAGCGGACACTGATTACCTGGATGAGTTTAGCAGGAATCAGGGCAGGTCCACAGAACGCCTGCTCAGGCCTTCTCTGTTGCGTCAACAGAAGGTCACCCAGCACTCTGGCCTGGCCGCTAAAGAACCACAGGCCAGTCTTCCCAGCAACTCGTCTGTCAGCAAATCCACTTGCAAAGTTCCCTTCCAGGACAATAACCGGGGCTCATCTCCAAGCACCTCCAATGGAAAAGCAGTTTATCTGGGTACCAAGACAGTATTAAGCAGGTCTTCTACTCTACCATTTGAAAGCAAGGGATATGAAGGAGAAAAAGCTGCAAGATCAGTGAAGGCCCTGACCAGTATAGCAACTTCATCTCTGTCAAAATCTTCCTGGAATGCTGGTAAAAAAACTAATGACGAAAGGGATGCACAGGCAACTCCTGATCTTCTGAAAGGTCAGCAAGAGCTTtcacaacaaacaaacgaaGAGACGGCAAAACAGATTTTATTCAATTACCTCAAGGATGGGAGCACAGATAATGATGACACTACTAAGAAGAAGGTCAACCTGGTTTTTGAGAAGATTCAGACTTTAAAGTCCAGGGCTGCAGGCAGCGTGCAAGCAGACAACAAACCCCCCGATTCCTCAGCTGAAGTGAAGCTATTGCAGGAACAGAGGAATGAGCTAGAGAAGAAGGTCACAGAGCTGAAAAAGCAACTGGAGGAGGAAACGAAGAATCAGAAGAGCCTGACCGAGGCCAAGGAGAAGACCAAGGCGGACATGACAGAGCTGCAGACGGATCTGGAGCGCAGCCAGGAGGAGTGCAGGAGACTTCGAGAGCAGCTTTCCAAAACTGAGAAGGAGCTGCGGAGCACAATGGAAGAGCTTTTCCAGGTGAAGATGGAGAGGGAGCAGTACCAGACGGAGATCAGAGACTTGCAGGACCAGCTGTCTGAAATGCACGACGAGCTGGACGGTGCAAAGAGGGCCGGGGCTGACGATGGGGAGAAGGAGGCTATTCTGGAGGACATGTTGCAGCTGAAGCTGGATTTCCAGGAGATGATGCTTGTGAAGGAGGATCAGGAGGAGATGTTGCGGAGGAGGGAGCGCGAGCTGACAGCGCTCAAAGGGGCCCTGAAGGAAGAAGTGGCCAGTCATGACCAGGAAGTGGACAATCTGCGGGAGCAGCTGCAGTGGCTGGTGAAAGAAGGAAGCAGCTCATTCATAAAAGGCAGTGGCTCTGCGCTGAAGGAGAAGGCCCAGGCCGAGGTGGCGAGGACAGCTGCGGAGGCCAAGGTGCTGAAGCTGGGCCAGGAAACGGAGAAGCTGCGCAGGAGAGTGCAGGAGCTGGAGAACGAGGTGGCCAAGCTCAACCGCATCATCGACCAGGCCAAGCTGGAGGAGAGCCGGCTGACTGACAGAATGAGCAGGCTGGAGagagagaaaagacagcTGGAGGACACTCTAAATGATGTgagggagcaggaggaggagatgggCGACGCCAACAGAGCTTTAACCACCCGTCTAGAGGATGTGCAGaGAAGCCTGACCAAACTCACCCAGGAGCACAAAGAGCTGAACGAGAGGCTGAAGGACGAGAAGTGCCAGAAGGAGCAGTTTAAGAAAACGAAGAATGAAATCGAAGATGAGAGGAGGCTGCTGGACAGAACGGTGGAGAAGCTGCAGAAGGAGATGTGTGAGATAGTGGAGGCCTCCCAGAAGTCCACGCAGGAGCTGCAGGTGCAGATTGACGAGTACAAGGAGAAGAACCGCAGGGAGATGACGGACCTGCAGAGACAGCTCCGGGACAGGGTCGCAGAGCTGGAGCAATCCCGCATGACTACCAAGAAGCTTCAGGAAGAGaTATCTCTCCTTAAAGAAGACTCGAGACTGTGTAAGAAAGAGCGAGATGACGCTGTACTGAAAGGACAAAGCTTGGAACAAAAGGTGTATGACCTGGAGATCGAGAAGGAGACTAAATCCCACGTCAAGGATGACCGATCCAGACAGATCAAGCTAATGGAGGATAGGTTAGCCCAGCTGGAGTTGgacctggaggaggagaggaataGTGGAGACCTGCTGATGGAAAGGATTGACCGTGGCCGCGAGCAGGTAGAACAGATGAGGAATGAACTTCTACAGGAGAGAGCTGCGAGACAAGACCTGGAGTGTGACAAGATTTCTCTGGAAAGACAGAGCAAAGATCTGAAGAGCCGAGTGGCTCATCTGGAAGGCTCCCAGAGGCCCAACAAGGAGGGGCTGGTATCTCAGCTGGAGGCCAGGATCCAGGAGCTGGAGGAACGGCTGGAAGGTGAAGAGAGGGATCGGGCTAACCTGCAGATGGCCAACCGCAGGCTGGAGCGCAAGGTCAAGGAGATGATGATGCAAGTAGATGACGAGCACCACACGCTGATGGACCAGAAAGACCAGCTGAGCCTGCGTCTGAAGGCGCTGAAGAGGCAGATGGACGAGGCAGAGGAGGAGATCGAGCGGCTGGAGCACGGCAAGAAGAAGCTGCAGAGGGAGCTGGACGAGCAGACGGAGGCCAATGAGCAGCTGCAGGCCCAGCTCAGCACCCTGCGCAACAGCAACAGGCGCAAGAGCACGTCTGCCCAGCTTCTCAGCGACCTTGATGACGAAGATGACGACGACGACCTGAGCATCGACGGGGAGCGTTTCTACAGCTCGTCTTCAGGATATAAATTACCGCTGGATGGCCCTGCTCTGGTCTGAGTTGTTGATTGGGTTACGGACGCTGCACTGAGGCGGAGATCCAACTCTGGGTCGCTGCTGGAAAGGACTCAAGCCACATACCACTTGAGCAAATTCTGACTGTCTGTCTTCTCCTTCGCCTGAGTGTGACTTCAGCTGTTCCAGATCCATAGTTTGAGATTTCACTCACCCACCCCCCCTTCTATTACCACTATTGCAGTGACCTCCTCTTTTGTAGTTATCTGCAACACCCTTCTCTTTTAGTTAATCGTCATAAGCAAGAGTAATTTATCAGCATCATATCTACATTTACAGACCATTATTACATTTAACctcatgcttttctttttaagaacgtgttactttgtgtttattactatcattgtttttttctacttAACTGGACCATTTATGCTGCCATTCTATTGAGTGTTAAGCCTTAAACACAAGTGGAGGGAAGGCGTattcttgtttaatttattacGTCCTTTCTACAAACAAGAAGGAAATGCAAATGAAGgcgatttttcatttttttgttcctgtaaGGGAAATTGACATGAGggatcatattttatatatttctttataataattttgtatatagataaaatgtagcaacacctattattttaaagcaatgcattaattagtcaattagtataatatagtttttgtttttgtttttttggtattaggatttttaaatgaagcaaaCTAGAAATTGCTTTACCAAAaccttttgtttaaaaacaaaaataagaggCGGATCATGCTATTTATATTGGATCTTGTATTGTATActacttcatttatttaatggtgcatttattttgtgcttgaCTGATCATCAAAACTTAGTTTAATTCATTCAACTGTTTCAAAATACATGAAGCCTCTATTTCTGTAAAACtagaaaacaaattgctttaCAAATTAGCAAGTATGCATTAGCTACATTCCTTGATCCTTAAAAGGTTGATAAGTCACTGTTACCactttttaaaagaacacaTACTCGTACTCGCTCCATTTTTACATGTCTGAATTGCACATGTGGAGATGAAAACAGTGTTAATGTTAAACTTGCCACTTTATTCAATAGCTTTATTGTTAACAGTTCCTTCAGGTAATCTGAGGTTTCATTGTGAATGCAAGTTACTATAGAGCCTGGTCTTTAAACCAGCACAgtggttaaaataaattgtgacaAAACACAGGGGACAAAGTCAAGCAGGCACCAACACATCCAAATCTGGAGGCTGAGCATTTGTGCCTCCTTGTAAGGGCCTGACGTAGAGTCTCAAGTTATTAATTCTCCAGTGCTGAAAACTAGtcaatttcagtttatttttttaagtgagaaGGGTGTGTGTTTTCATATGCATGGTCTCTGCGCTTCTTAAAGCCACTACTGCACAATATTGTATTGACAATCGCTAGACTGGACCACACTGTGGTGTTTTGCACTGTGTATTCGATGCGCCCCCTTGGCACTGACAAGGCTGCTATTGGCTTTGATTGTTGCTACTCCCACAAGCCATTGGGGGATGGGTCAAAGGTTATTTACACTGCTACCTCTCTGTGTACTTAACTGTAAAGCTGCAGcaatacctttttaaaataaagaattattagCCAACCTCACATGGATGGGTTCCACTTCCTCACTTTCATTTGGCAGAAacatcatttgcatttttaagatGTTAAGTCCATTACTATCCCCATTTTCGTattagtttttagattttttgtttcaGCAAGGTTATGTAACTCATAACACACAAATGCACtcagtgtaatttaatttgcctGGGGAGACGGGAGTTGgagaattttttattttttttgcttatcGTTTTATAAAAGACCTGTATGATTCTATAtgtgattatttgtatttacaaAAGAAATGGAGCCTGCAATAAAAAGTGTATCTTTGAGAATAATTGCTTATGTTATATCCTGAAAATCAATACTGGGGTAAGCA

Function

GO: NA

KEGG:

id description
K21110 CGNL1; cingulin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30194 lncRNA downstream 149016 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 264356 19791701 ~ 19797576 (-) True AMCG00007481
TU30064 lncRNA downstream 481948 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 580845 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 1160335 18901365 ~ 18901597 (-) True G23875
TU30293 lncRNA upstream 110298 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 110298 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 110298 20211019 ~ 20222004 (-) False AMCG00007494
TU30336 lncRNA upstream 187802 20288523 ~ 20288842 (-) True G24213
TU30339 lncRNA upstream 229979 20330700 ~ 20330902 (-) True G24216
AMCG00007491 mRNA downstream 8278 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007492 mRNA downstream 29137 20029132 ~ 20032795 (-) True AMCG00007492
AMCG00007484 mRNA downstream 104479 19943855 ~ 19957453 (-) True AMCG00007484
AMCG00007486 mRNA downstream 120097 19934136 ~ 19941835 (-) True AMCG00007486
AMCG00007485 mRNA downstream 132543 19925437 ~ 19929389 (-) True AMCG00007485
AMCG00007489 mRNA upstream 11329 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007494 mRNA upstream 70608 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007493 mRNA upstream 167950 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007500 mRNA upstream 361783 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 386710 20487431 ~ 20492501 (-) True AMCG00007502
TU30203 other downstream 138779 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1284294 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2002983 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3440027 16530174 ~ 16621905 (-) False AMCG00007375
TU29238 other downstream 3739281 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 230792 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 370390 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3870950 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4165103 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 5163611 25264332 ~ 25264951 (-) True G25422

Expression Profile