RNA id: AMCG00007491


Basic Information

Item Value
RNA id AMCG00007491
length 2972
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00007491
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20034695 ~ 20053654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGACACAAAACAGGTGGTAGAAGGGGCCCAGTGCTATTGTTCTTGGTTCGGGGACTTTGGAAAGGCTTCCCTCTGTGCTACGGATACCGTTCCTGAGGAGCTATGATCAAGTACGGCTCTGGATCTACTGTCACCACTTCTGAGACCCAGGACCCAGCCAGTGACAGGAGAGTGCGCAGACTGAGACTGACCCTCCACTCCAATGACGTGCACCTGGATGAGATGGGGGCCCCAGACAGCgcgGTGAAAACTTCAAGAAGGAGGAGAAATGGCTACACACATCAGGAGACACCCACGGTGGGCGAGCTCCCCATACTGCATCTCTCCAGCATATCGAACAGAGGCAAAGGGGCGACCCCGAAGAATGCCAAGATCTACGGTGTGGTGCACCGGCCCACCTCGGGCAGCCGGGAGGAGGTGGTGGCATGCGAGTGGTCACTGAATCAGCTGCAGGACGAGATGAAATACATCAGAGAGGTGAGGGACTCTCTGGAGAAGGTGAGGGAGAGAATGTACGGTGAGTTTGGTGGGATGAAGCGGTCGATTCAGAAGCTGTCCAGGGAAATGCATGTTGCCAATTCACAGCAGCAGACGATACAAGCCGAACTGAAGGTGAAGACTGAGGCGCTGGAGAGTTTCGACCAGATGAACAGCTCTCTGATGTCAGCGACAATTGATTTGCAGAAAACTGTGCTGGAGAACTGCCTGGAACgcacagagaggagggaggaggtgaAGAGCCTGCGCAGCTCCTACGAAAGGGCGCTGGAGAGCATGCAAGAGAAGGAGCGGCAGCTGGCAGCAGCGCTAGCGGAGAACGAAAATCTCAGGCTGAAGATAGAATCCTCACAAGAAGCCAACTCGGAGGTTCTTAAGGAAATGACACAGAGGATGTACAAGGAATATGAAGAACGGCTGCAGGAAGAGCAGCGAAAACACAGAGAGGAGATAGAGGCTTTCCAGGCACGGATCGACGATTATGTGAAACAGATAGAGGAAACCAACGAGAAAGTGAAAATAATGGAGGCGAAGATCATCGAGAGGGATGAGCGGCTCATTGAGCTGGAGCGACTCATTGGCTGTATGGAGCAGGGCTGCTGCTCACTGAGTGTTGCCTCTTTCAGGTCTCGACAGCTGGAAGAAGAGGCATCCAGCCTGAAAGAGAGGATCAAACACCTGAACGACATGGTGTTCTGCCAGCAGAGGAAGGTGAAGGACATGATCGAGGAGGTTAATATGTTGAAGTCAAAACTCATGCGGAAGGACATGTATATTGCGGAACTGCTGGACAGGATATCCATCGTGGAGTGCGAGAACAATGAACTGCAAGACAAGCTGAATTTCTTTCTGCCACATCAGAATGGAACGTGGGCATCAGTGGAGACCCTAGATGGTGGGCTGAGCAGTGACCTGCCCTTGAGtccCAAGCTGCAACCCCAGGGTGAAGTGCATTACAATCCATTCCTAGCCAACCCAGAGGAGAACAGTTCAGTCCCAACCAACCTGGTGCAGCCCAACCCATTCCTGGACACCGTAGAGGAGAACACTCCACTCCCAACGAGTCCAAGGCcaaccagtccagtccagcctaACCCATTCCTAGACAGTGCAGTGGAGACCAGTCCAGACCCAACCAGTCCAGTCTCATCGAGTCCAACACCAACCAGCTCTGCCCCAACCAGTCCAGTCCCTaccagtccagtgcagtccagtccagcaagAGGCCACCAATCACGGATCTACACCCCCTACATGCAGCTCATGGAAATAAGTGCAAGACTTCCAGTAGAAGAATTCAATCCctcttttaaataatacagaggAAATAACTGAACTACATAAaatttttcatgtaaaaattgCTGAATGAAACCTCCATGGTTCACCAAGGAACACCAGTATTAACAGTCTGCCTAGCAGTTACATATCAATGGATTTCGATGACCCTTTGGGAAAATATTAGATTAAATAAGTCACAATGTCCAATCAATACCAGTGACTTGGCCATCAATTGCAATTCATCCTTAATTCTCCATGCAATGCCGGTCCATTGAATTGGGTCTGCAGTCACCAACAGACTGTCCTGTAGCTGCGCAGACAAGACTAATGTTGGTCCTAAGTGTTGCAGTGTCTGTCAGTGTTCCAGGGCTCACTGTGAGAAGGAGTGTAAAGCCTTTTAACTTTGCACATAAACACTGATAAACCCGCCTGTTGAATTAcatgaagaaaattaaattttgaTACGTGTAAATAAGTTTATCATGTAAGATTTTATGAAATTGAATaaactgaagttttttttttctgtcactaATGAAATGACGCTGTTGTGTTTTATACAAACTAATGTAAAATGATGATCGTGTTACTTTATTATAGaaaggtttatatttttaatataaattaacacactatgtatgtgtgtaggtgtgtgtgtgttgcacatATGCTCAGGATGAAGCATATAATCTGAATGaaatctatatgtatatttttaaaaatattttaatatatattgggTCTCTATTATGTTAATATGCAGCGATCTTATAAAGTGCTCTTTATTGCCCATTAATAATGGTAAAAGGTATtgattgaaaaatataacagaCTGCCATATCTGGGCTCACAgtacatttaacttttaaatactgCCAGTGATGCTGACTTGCTATTGATACAGGCCTAAatgataaatgtatatttaaaattgattttgtattgaaagtattaattatttaaaagtacaaataaaaatagcaataacAGCTTCACTACAAGTTTATACTGTACTGAATTTCCCAGGGATCAATGTACTTTTACCCCGTGGTCAGTATGTGTCATAATTTGATGaggttgaaataaaatactgtgatttacatttacatttatcttTCATACTTTCTtctgtattgtaatttaataataataattatgactTATGTTGCtgttacaagaggtgctgggag

Function

GO: NA

KEGG:

id description
K22031 MYZAP; myocardial zonula adherens protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30194 lncRNA downstream 121779 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 237119 19791701 ~ 19797576 (-) True AMCG00007481
TU30064 lncRNA downstream 454711 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 553608 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 1133098 18901365 ~ 18901597 (-) True G23875
TU30293 lncRNA upstream 157365 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 157365 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 157365 20211019 ~ 20222004 (-) False AMCG00007494
TU30336 lncRNA upstream 234869 20288523 ~ 20288842 (-) True G24213
TU30339 lncRNA upstream 277046 20330700 ~ 20330902 (-) True G24216
AMCG00007492 mRNA downstream 1900 20029132 ~ 20032795 (-) True AMCG00007492
AMCG00007484 mRNA downstream 77242 19943855 ~ 19957453 (-) True AMCG00007484
AMCG00007486 mRNA downstream 92860 19934136 ~ 19941835 (-) True AMCG00007486
AMCG00007485 mRNA downstream 105306 19925437 ~ 19929389 (-) True AMCG00007485
AMCG00007487 mRNA downstream 111546 19917101 ~ 19923149 (-) False AMCG00007487
AMCG00007490 mRNA upstream 8278 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007489 mRNA upstream 58396 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007494 mRNA upstream 117675 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007493 mRNA upstream 215017 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007500 mRNA upstream 408850 20462504 ~ 20472919 (-) False AMCG00007500
TU30203 other downstream 111542 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1257057 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1975746 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3412790 16530174 ~ 16621905 (-) False AMCG00007375
TU29238 other downstream 3712044 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 277859 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 417457 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3918017 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4212170 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 5210678 25264332 ~ 25264951 (-) True G25422

Expression Profile