RNA id: AMCG00007493


Basic Information

Item Value
RNA id AMCG00007493
length 1296
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00007493
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20268671 ~ 20285201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAAACGAAAAGCAAGTCTTCCTTACAAAAGATCAAGAAACCTCTATCAGCCAGACACGATAATTCCAGTTATCCCAAACCTGTTAACCGACCCTCATCTGTGCCACTAAAGAAACCACCACAAGAAGATTTGCTTGCTAAGGAAGAAgaatataaGCGTTTGAATGCAGAGCTGGAAGCAAAAACGGCTGAACTTGTTCGGCAGGCAGAAGAGGTTATGAGGGAACAGAATGAAGTACTATCAAGGCCAATATCCTCACATCTGAATGTTGATATtggagaagaggagggagaTTTTAGaggTTTCAGTCCACCATCACCTCCTATAAAACAGCCCTCTGCAAAGGTACTGACCAAGAACAAGGCCGCTTCGAAGTCTACAAGTCAAAGTAGACCCCTGTCAGCAAACAGAATAAAGAAAGTGTCAAAGACAGCAAGAACTGGCCCAGCGGATGACGTTGCAGTGCTTGAGGACTTTGTGGATTTCTCCCTGGCCAAGACAATTAGCAAGATTGAGGGCAAACTGGAAGAGGGAGACCTACCTCAGAGTCAAGACGATGACATCATGCCCGTCGTGGGCAATGAAATGGGCTCAGAGGCTCAGATTCGGTTTCTTAAGGCAAAGCTACGAGTCATGCAAGAAGAACTGAACAGACTTACTCATGAATGTAACAGGAAGgATGACGAGAACAGCAGCTTAAATACCAAAGTTAAGGAGCTGGAGGATGACTTTTCAAGACTGCACAGAACGACCAATATTCAGCAAACCCAgattgcaaaacacaaaagtctGGCAGAAGAGTCCAACAGAAAGTGTGAGGGACTCCTGCAGCAGGTGACTGCCTTACAGAAGGAAATAGAGGCCCTAAAGAGAACGCAAAAACAGGCTGCAACCAATCATGGTGCTACAGAGGTCCGGCTGAACAGAGCGCTGGAGGAAGCTGAAAGATACAAAATGGAGCTAAATAAGATTAAGCACAACAGCAAGGAAGCTGCCACTCAAGAACAGCAAAAGATGGAACTCCTAAAGGCAGAAAACAAGAAGCTGGAGAAACAGAAAACTGAACTGATGGCGGGCTTTAAGAAACAGCTCCAACTGATAGACATACTAAAGAGACAAAAGATGCACATGGAAGCGGCCAAGATGCTGTCGTTCACTGAAGAGGAGTTTACAAAAGCTCTTGATTGGGGAAATCGTTACGCCGCTGACTCATCGAAGCctgagaaggaaagaaaggaaaaaagctaCACAAATGCCGTGAAGTCTGATTCCTACGCACGCATAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30293 lncRNA downstream 46667 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA downstream 46667 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA downstream 46667 20211019 ~ 20222004 (-) False AMCG00007494
TU30194 lncRNA downstream 355755 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 471095 19791701 ~ 19797576 (-) True AMCG00007481
TU30336 lncRNA upstream 3322 20288523 ~ 20288842 (-) True G24213
TU30339 lncRNA upstream 45499 20330700 ~ 20330902 (-) True G24216
TU30341 lncRNA upstream 49870 20335071 ~ 20337168 (-) True G24218
TU30343 lncRNA upstream 52100 20337301 ~ 20339837 (-) False G24219
TU30344 lncRNA upstream 52100 20337301 ~ 20339909 (-) True G24219
AMCG00007494 mRNA downstream 46737 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 125938 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 167950 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 215017 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007492 mRNA downstream 235876 20029132 ~ 20032795 (-) True AMCG00007492
AMCG00007500 mRNA upstream 177303 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 202230 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 302371 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 320982 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 363056 20648257 ~ 20676334 (-) True AMCG00007511
TU30203 other downstream 345518 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1491033 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2209722 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3646766 16530174 ~ 16621905 (-) False AMCG00007375
TU29238 other downstream 3946020 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 46312 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 185910 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3686470 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3980623 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4979131 25264332 ~ 25264951 (-) True G25422

Expression Profile