RNA id: TU30294


Basic Information

Item Value
RNA id TU30294
length 1939
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00007494
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20171329 ~ 20222004 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACATCTCTGGCTCCGCTTGGCGGAAGGATACCGCACTGAGCGTCAACGTGGTGCTGAGGCTTGCGAAGCAAAAATGTCTGCCTAAGGGAAACTCGTAAGTTACATTCAGggaatattttgcaaaaatATTACTGAAAACACCTTCATTGTAAAAGCGAGCAGACGCGAAGAAGGAATACAAGGCTTCCGTTTTCAGCTCCGATCGCCCTAGTTGGATTTTTAGACGGGAAAAGGTAAAGATCGTAGTGAGTTTGAAGAAAGGGGTTCGGACTGGGGGAAAGAAGTTGGGATACAAGAAAAGACTATGGAGCTGGTTTGAACCAAGGGTCGGCATTTGATTTACTACTTTTACTTCAAATTGCATCTTACCATCTACTCTAATTAACGAAGAAAGCACGATCTCTAAGATATACCTGTGCATTTGTAATGCGACAATCCAAACatatctattttcttttctttttaaagcactgaCCGTTTTTCAATCAAGAACCTGAGCAAATTGCAACAACCAGACGAGTTACAAACGACCCTTTCCAAGCATGCATAACGAAGTGTAATGCGCTGCGAATAACAACACATCCGAGCAAAAGTTACTTGTTACCGAACAGGCTTTTTAGCAAAGTGTGAACCATacctttatttgtttctggccacAATCTGATGTTGCCGATGCGAAAGTCGCTTGTCGGTTgtgttgtgcatttatttacactgtCCAGTGCCAATTGGATTGCAACATTTCATTGTATCGATTTGTGCTGGAAATGTGTCTTCATAGCTCCCCAGACGTGATTTGGTCTTTGAGGTCTGATAGGTGTAGCAGGAGGGACAGACAGTAGATACTTACTACACCGAAAGTCACATCTATTGTTACAACTGTCGCCAAACGCtggttcgtttttttttttatttatttcttttttcgtGGGTCCCTGAAGAATTTGTGCGCGTGCAATCCTAGGGTGTAGTTGCAGCAGATCAAGATGAACCCACAGCAGCGGATTGCCGCTATTGGAACAGATAAGGAGCTCAGCGATCTGTTGGATTTTAGTGCGATGTTCTCTCCACCTGTTAACAGTGGGAAAAACAGACCTACTACTCTGGGAAGCAGTCAGTTCAGTGCACCAGGTTCTTACATCTCAAGTAGTTTTTTTAGGTCGAAGCAAGTGATGCAGATTGTTTGATGTGCAAGCAGTGATGGAGGGGACAGAAGGGTGCAGTCAGGCTCTTAGCTGATGGACAGGAGCATCACACGAAAGATGGGACTGCTAGAAAAGACTggagagagacaaagaaaagaaaagaaaagaaaaggcaccccccccaaaaaaaaccccaaaacaaaccaaaaaatgacCATGAGACATCATGGTAGAGAAATAGAGATGCCCAACATggagaaatcaaaagaaatgagagaaaataTCCTTAAGTGCTGAAGAGTGAGCACTATATGAGCAGAGctgtggagggggtggggtgtggTGATGGGTTATGACAGAAAATTACAAGTAGGAGAAGTTTACAAGAGAGGGGATTGAAGTGATCAGAGCTGGCACACACAACTCCATGTCAGTTGTGCAGAAGACTGGTTAATTGGCATCAGTGCTGTTCCCCCATGCCCTACCTGTAAGTCAAGGGTAAAACAAGGCCTAGTGTTTGTTCGTCACATTTATTAGCaccaattattttaatcttaattgCATTCTAAACTCAACCATGGAGTAGATCTAATTTTTCTGTGAACTAGGGACTCCACAAAAGATGCCTGACTTCATAACCATCAGACCCATTTCTGCGTGGCTGTGATTTAATCGATACAAAGATTTCTCTGTGTGCTCTTCTGtagaattaaattatatatttttaacgattatattttatttgtactgttttgttttttcatgatgcaggtaataaaaaatgtgatccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30194 lncRNA downstream 298103 19867858 ~ 19912916 (-) True G24102
TU30182 lncRNA downstream 413443 19791701 ~ 19797576 (-) True AMCG00007481
TU30064 lncRNA downstream 631035 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 729932 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 1309422 18901365 ~ 18901597 (-) True G23875
TU30336 lncRNA upstream 66519 20288523 ~ 20288842 (-) True G24213
TU30339 lncRNA upstream 108696 20330700 ~ 20330902 (-) True G24216
TU30341 lncRNA upstream 113067 20335071 ~ 20337168 (-) True G24218
TU30343 lncRNA upstream 115297 20337301 ~ 20339837 (-) False G24219
TU30344 lncRNA upstream 115297 20337301 ~ 20339909 (-) True G24219
AMCG00007489 mRNA downstream 68286 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 110298 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 157365 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007492 mRNA downstream 178224 20029132 ~ 20032795 (-) True AMCG00007492
AMCG00007484 mRNA downstream 253566 19943855 ~ 19957453 (-) True AMCG00007484
AMCG00007493 mRNA upstream 46667 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007500 mRNA upstream 240500 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007502 mRNA upstream 265427 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 365568 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 384179 20606183 ~ 20618162 (-) True AMCG00007508
TU30203 other downstream 287866 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1433381 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2152070 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3589114 16530174 ~ 16621905 (-) False AMCG00007375
TU29238 other downstream 3888368 16321037 ~ 16322651 (-) False AMCG00007365
TU30340 other upstream 109509 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 249107 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 3749667 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4043820 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 5042328 25264332 ~ 25264951 (-) True G25422

Expression Profile