RNA id: AMCG00007495


Basic Information

Item Value
RNA id AMCG00007495
length 3635
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00007495
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20268160 ~ 20275806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGAGTTTACAACAACCAATCACAACGCGTGTTATTGGAGTGTGCAATGGCGCCCTGTTTCCAGGACAACAGAGCGCAAACTATACCGGTGTAGGCAGAGAGAGCTGTGCGCGAATAGGCGCTTAATACCCGATATTATCGTCTGAGCTTGAGACAAACATCGTATTAAACGTTCAGGACGATGGCTTCGATGAGTCAGCGGCGTAACCTGACACACAACCAGCAGCAGAAGATGATCACGGAGGCAAGGAGACAGGAGGTGCACCGCGAGGACCACATGAAAAGCATTGCCCAGGAGAAGCAGATGAAAGCCAACCTGTTGAGTGAGGAACGCTTGGAGAAGAAGAGGTACCTGAGGAAGATACAAGACGAGGAGCATGAGAGACAGATCGAGGATACCCTCCACAGGGCAGAAGAGGAGAGACTCCTCCGAGAAAAACAGCTTGAACAAGAGGAGAGAATGGCCAGAGAACTAGCACGCATAAACTACGAACAACTGAGGGATGAAAAAATGCGGCAACAAATCAGGGAAAACAGtgttgaaCTGCGGGAGCTGGAAATCAAGCTGAAGTCTGCTTACCTAAACCGAGAACGTGCCGCACAGATAGCTGAGAAGGAAACGTTGAGATATGAGACCATGAAAGTGGAGGCTGACCAGGCCCGTAAGTTGAAGAGCGAGCAAGAGAGAGcctcggaggaggaggagaagcagGAGAGGAGACGCTACAAGGAGACAGTCCGCTACCAGCAGGATCTGGAGCAGCAGCTGgtagagaaggagagaaagaaacaagagGCCTACGAGGAATTCCTGAAAGAGAAGCTTATGATTGACGAAATTGTCAGAAAGATTTATGAGGAAGATCGAACGGAAAGACAGCTGAAACTGGAGAAGATGACCGCTACCCAGAGGTATATTGATGAATTCAAGAAGCAGCAAGCAGAGTGGAGACGCATGGAACGAGAGAAAATGGAAGAGGAGAACAGACGCATTATGGAGTTCACCAAATATCAGCAGCTCCGGGAAGAAGACAGAATGGCCAAGGTCAAAGAAAGAGAAGATATGAAGCAATATCTCCAGAAGAAGCTCACAGAACAGATTGAAATGGAGCGACAGCAGCGTGAGGAAATGGACCGTATCCGTGAGGAGCTCTGTCTTGAGGAACAAGCAGAAGCCGACAGGCAGAAAGAAATTGAGGAAATGGAGAAGAGAATTAGACAGCGTCTGGAAATGCAACAGACATTCCAGGAACAAATGGCTTTCAAGCAAATGCGGCAGCAAGTGGAGAAGGATGAGGAGGAGGCATTCAGTCAAGCGATGATGGCCAAGTTTGCAGAGGATGACCGCATTGAGCAGATGAACGCCCAGAAAAGGCGCATGAAGCAACTAGAGCATCGCCGGGCAGTGGAGAAGCTGCTGGAGGACCGGCGCCAACAGTTCCAGTCTGACAAAGCACGCGAGTTTCAAGAACGGGAAATGGAACAGCAAAGGGAGGCAATGCGGCATCAAATCATTGAGGAAGAACGGCAGAAACTGCTCCGACATCATGCCACTAAATTGCTTGGTTACCTTCCAAAGGGAATATTCAGAGGTGAAGAAGACCTTGAGCTTTTTGATGAAGATTTTAAAAGGAATTTTCAGAAGCAGCAGGTTGATATATTTGCTGACGAGGGCTGGGGAGACAAATAAGAACATTTTGAGAACATCCACTAGATGTCAGTGTTGTGCCAGTATGTTCAACTCAAAAAcccattaaatattttattcctcATTTACATTGACATATTAGTAGATATGAACAAATACAGCAATAACCCAATGTTTTGTTACCATGTTGTGttcaacaataaatatataagtacatTTCTGAGGGCAGGAAAAATAGATTGTCCTATTGTCTTATCCATGGCTGAGGTACAGGTGTTATGTATGACTTAGGCAAACATTAATTTGACATAGAGAATGCTTTGTTTGTAATATAGTCCTGCCTCCAGCatcagaatattttaaaattttaaaactgACAATCACCTGAAAAGGTTTACATgacaatgtgttattttaactACTTTGGAAATAGGATTAATCCTTtctctttgaaaacaaatgtgtaatcaTTATTTCAGTGGTAGTTCTACAGTTTTGTACTTATCATGAAGGTAgactgattttgtttgtttttaacacagagAAGTAATGGACACACTATACatgcaaaaatattatttaatcacACAAATAAGAATACATTGCCATTTAGTGATGCTGTTCTTGGCTTTCCTGATCAGTATGCTAACCTTAACTCTTACGATTTCCCCAATCAAGAGCTTTTGTAAACTCCTCTTCAGTGAACGACAGCATCTTGGCCGCTTCCATGTGCATctgtttagaaaaatatatattaatcttaGGTACCAGAATTTCTGACACCTGAAGAGTCAATACATACAGATATTGCCAAAAACTGGTATTTTCACAGTTTCTGATAATGTGCATGTATCTTTTTGAGTGACCTTTTAGGCAGTGGGGGCACCCATTTGCAACTGACACTGTTCTAATTACACAGTCTCTGGATTCGCAAGCCTCTGTTTAGAAgctataatgaaaacaaaaagaaaagagtcTGCACACATTGATGGTTTATAACTGCATTGAAATGCTAGTATTCCTAATGATCTTTACACTTTTCTTCTACCACTCCCTCTCTTtcctgtttgcattttaataccaTGGAGCTGTACTGTACTAAAAGTATACTGGTCTTACAGGGCTTACATCAGGAAATAGGACTGCATTTAATCAGTGGTGATACTTCATTTaaaagctctggaaaaattgCTACGGATGGATTTCATTTGAGATGTTTACCCGCATATATGGCAATCATTGTGGCTAATTGAAATTCCAGTGGGGGTAAATGTATAGTGCTCCAGCTTGCATTACCTTTTGTCTCTTTAGTATGTCTATCAGTTGGAGCTGTTTCTTAAAGCCCGCCATCAGTTCAGTTTTCTGTTTCTCCAGCTTCTTGTTTTCTGCCTTTAGGAGTTCCATCTTTTGCTGTTCTTGAGTGGCAGCTTCCTTAAAGAAGTGAAAGAAGAATGCATAATCGTGTGTAATTGCAGATGTACACTGTAGCATCATAACATTAACCAAAGCAAGGCCAGAAACTATGTAATAGAATCCTGTGCTCCTTTGCTAAAggtattgaaatgaaatgaatggcAACTACAGAGCTttgactttgttttgtgtttctgctaAGGCAAataacagatgtgtgtgtgtgtgtgtatttgtatctatatatatatgcgtgtatATAGATTAGTTGCTTATACATCCACACTTGTGATTGCAATCTACTATGAAAAactccaatttattttttccccttagaGTGGCTATTAATAGTAatatacagaaacatttaaCTGCAGccttaaattaacattttttcataAGCTACTACATTAAAGTCTATAAGGGTCTAATCTCAAGTGATACACTATTTAGCCAGATAGAGATGTTTACCTTcttctggaaaatatatatttttgtgtgtattttcaggATGTTTCTTCAGGAGGTTTCTTTGTGTACCAAAGTGTATTGcatagttttttaaataaaag

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30324 lncRNA upstream 2546 20265393 ~ 20265614 (+) True G24205
TU30321 lncRNA upstream 11758 20256146 ~ 20256402 (+) True G24202
TU30271 lncRNA upstream 163090 20104720 ~ 20105070 (+) True G24167
TU30260 lncRNA upstream 176533 20061973 ~ 20091627 (+) True G24156
TU30211 lncRNA upstream 318569 19943879 ~ 19949591 (+) True AMCG00007483
TU30335 lncRNA downstream 61515 20337321 ~ 20339803 (+) True G24212
TU30347 lncRNA downstream 68279 20344085 ~ 20344387 (+) True G24220
TU30393 lncRNA downstream 211339 20487145 ~ 20487683 (+) True G24252
TU30394 lncRNA downstream 211999 20487805 ~ 20488377 (+) True G24253
TU30395 lncRNA downstream 212725 20488531 ~ 20489202 (+) True G24254
AMCG00007497 mRNA upstream 16661 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007488 mRNA upstream 275551 19978940 ~ 19992609 (+) True AMCG00007488
AMCG00007483 mRNA upstream 316732 19939170 ~ 19951428 (+) False AMCG00007483
AMCG00007482 mRNA upstream 358048 19881068 ~ 19910112 (+) True AMCG00007482
AMCG00007478 mRNA upstream 475402 19780577 ~ 19792758 (+) True AMCG00007478
AMCG00007496 mRNA downstream 49670 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007499 mRNA downstream 95408 20371214 ~ 20385040 (+) True AMCG00007499
AMCG00007498 mRNA downstream 139558 20415364 ~ 20428546 (+) True AMCG00007498
AMCG00007501 mRNA downstream 165697 20441503 ~ 20446920 (+) True AMCG00007501
AMCG00007509 mRNA downstream 185453 20461259 ~ 20462953 (+) True AMCG00007509
TU29920 other upstream 1212027 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1697696 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 1975822 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2059852 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2066200 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 784595 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 2005894 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2913654 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3916415 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7808016 28083822 ~ 28094741 (+) True G25822

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_06951574_06956778.mRNA True 1654 mRNA 0.48 9 CI01000026 6951410 ~ 6956813 (-)