RNA id: TU30382


Basic Information

Item Value
RNA id TU30382
length 932
RNA type TUCP
GC content 0.43
exon number 2
gene id AMCG00007500
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20462504 ~ 20472919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGCAAAGGCTATTTGCGCAGATGTCGTTTTCGTGTTGCGCAAATGTCGGCAGTTCTGCGAGTATTTGCACCTTTAAACCAATTGCATTACAAGAAACTTGCAGATCTGTACAGAACTGCAAGAATCTGCGCAACAACAATGCGAACAGTACCTGCGAGAGGTCTGTCACAGCTCGCCGTACCAGCTGATTCTCCCTGAACCCAATCGGACGCCGTTGCTAAGTTCAAGTAACCATAACAAACATCCAGTCGGTGGTGCTGATCTGTCTACTGGTTACATTTGGCAACAGTATTGGCTGCAGCACAGTCTGGATCTCAACTGCAAATTTCCAGaaAGGTACCTTTATCGACGATGTCTGGTACTGTAGGCTATGCATCTGGGAGAGTGGATTCTTCCCACGCTTGTGCGAATTTGGGTAATCCTGTGTTTTCCTGCATGATAAAGCCCGGGACTCCCTCCACATCTTCGGTCTCACTGGGACGACATCAGAACCTTCTCTATAAAACTACATCCAGTGAATATGGTGTCATTTCTCCCACGTTTGAAACGGCTCCCTGTACTTACCACCCAATGTCACAGAAATTCTCTCAGCACCTTGGAAACTGTGGAATGTACCGGAACAGCTCCTTTAACACGAGCCTGGACAGAAGCAATGTGTATGATTGTCCCAATCTGCAGAATACTCTTTGAATCACTGgaaaactgtaatgtttttacaGTCTTCCATCACTCTCCTTTATAGTAATTTGTAACATAATCAGTTCCTGTAATATTCTGTAAtatgtaatgttattgttttcttcacatctttttattttgcattaaaaagatACATCACCCATTTAATATTATCCTTTGTTTTAACTGCACATCATGCCACAAATCTGCTTCAATTGTGTATGATAGCATCttactgaagtgcagaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30375 lncRNA downstream 4676 20465253 ~ 20466435 (-) True G24243
TU30348 lncRNA downstream 126732 20344039 ~ 20344379 (-) True G24221
TU30344 lncRNA downstream 131202 20337301 ~ 20339909 (-) True G24219
TU30343 lncRNA downstream 131274 20337301 ~ 20339837 (-) False G24219
TU30341 lncRNA downstream 133943 20335071 ~ 20337168 (-) True G24218
TU30419 lncRNA upstream 41082 20513786 ~ 20517409 (-) True G24271
TU30420 lncRNA upstream 41082 20513786 ~ 20517473 (-) False G24271
TU30495 lncRNA upstream 587556 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA upstream 590981 21063685 ~ 21066733 (-) True G24335
TU30598 lncRNA upstream 677570 21150274 ~ 21177594 (-) True G24410
AMCG00007493 mRNA downstream 185910 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 249177 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 328378 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 370390 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007491 mRNA downstream 417457 20034695 ~ 20053654 (-) True AMCG00007491
AMCG00007502 mRNA upstream 14727 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007507 mRNA upstream 114868 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 133479 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 175553 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007510 mRNA upstream 240847 20713551 ~ 20717142 (-) True AMCG00007510
TU30340 other downstream 139300 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 547958 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1693473 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2412162 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3849206 16530174 ~ 16621905 (-) False AMCG00007375
TU31390 other upstream 3498967 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3793120 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4791628 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 5158091 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 14396731 34869435 ~ 34869807 (-) True G26961

Expression Profile