RNA id: AMCG00007501


Basic Information

Item Value
RNA id AMCG00007501
length 1494
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00007501
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20441503 ~ 20446920 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCCtccaccccccccgccccaccacCTGTACGCCAAGGCCAACAGCTCATCCACAGTGTACCTGCACTGGGGCCGCCCCGCCTTCACTTCGGGCCAGACTGTCAACTACACCATCCGCTGTAACCCTGTGGGGCTGCAGAATGCCTCCCTGGTGCTCTACCTGCAGACGTCAGATCAGCACATGCTGGTCCAGGGTCTAGAGCCCAACACCAGGTATGAGTTTGCGGTGCGTCTCCACGTCGACCAGCTCTCCAGCCCCTGGAGCCCTGTGGTTTATCACAGCACGTTGCCCGAAGCTCCAACCAGACCGCCGGTGGGGGTGAAGGTGACGCTGATCGAAGACGACACAGCCCTGGTCTCGTGGAAGCAGCCGGACGAGCCCAACATCGTTGTGACACGCTACACCATTCTGTTTGCATCCAGGAAAGCGTGGGTTGCAGGAGAGTGGCAAGTGCTTCAGCGAGAAGCCATCGTGGTCACAAACAGGCTCTGTTATGTCCAGGTCCACCCCTTCCTCCTTTTAAAGCAAGGGAGTATCACTATGGCGCTGCTGGAGAACCTCCTCCCGGGAAACATCTACCTCGTTAAGATCTCGGCATCAAACGAGGTGGGAGATGGACCCTATTCCAATGTGGTGGAGTTGGCCGTGATGTCAGAGAGGTCCCATATTGGTGTGAAGCCCAAGCGCTCTGACAGCAACGCAGAGGCTAAAGCGTACTCCAATGGCTTTTACCACCTCGACCAGAAATCGATGACGGGGATTGTGGTTGGAGTTTGCATTGCCTTGGCCTGCATCATCATCTGCGTTCTAATACTGATCTACAGAAGCAAAGCCAGgaAATCGTCTACCATAAAGATCATCAGGCAAGCCAATGGACAGGCCTCTCACGCTGCTGCCCAGTTGACTGCTGACAGCCAGGCGGAAAACACAGAATCTTCAATGCTAATGATGGGAAATGATTTCATTGATGCAAAGgGTGGGACCGATCTCATTATTAACAGCTTGGGGCCAGTAAATCCCAGTagcatgaagaagaagaaatggtTGTTCTTCAGTAGTGATGATAAACAGAAGATAAAGAGAGGCCAGGCTCAGAGGAGAAGCGTGCATGCCTTATGCTCTTACCAACCCGGATCGACTGTGCTGACCTATGAGGAAGAGTCTCCCTCCTCCCTGCAGCCGCCCACCTCCCTGCAGGTCCTGTTTGGCCCCCTGGGCGACACAGAGCACTCCCAGAACAGTGAGGGCAGCCATGAGACGGGTGACTCCGGGCGATACTCCCATGATGAAATGGAAATGACCAACCTGTCTTCAGGACACAACACGAGACCCCCGTCGCAGGAACTCTTCCCCTGCCAGGAGGACGAGGCCGCTATGGAGAAGCCCACCTCAGAGCAGCCTCACTTTTCTCTGGAGATCCCTATGAGTTGTGCCTCGGAAGCACCTCCAGACCCGCTGGCAGCAACTCCAGCCCCTTGTCCTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30347 lncRNA upstream 97116 20344085 ~ 20344387 (+) True G24220
TU30335 lncRNA upstream 101700 20337321 ~ 20339803 (+) True G24212
TU30324 lncRNA upstream 175889 20265393 ~ 20265614 (+) True G24205
TU30321 lncRNA upstream 185101 20256146 ~ 20256402 (+) True G24202
TU30271 lncRNA upstream 336433 20104720 ~ 20105070 (+) True G24167
TU30393 lncRNA downstream 40225 20487145 ~ 20487683 (+) True G24252
TU30394 lncRNA downstream 40885 20487805 ~ 20488377 (+) True G24253
TU30395 lncRNA downstream 41611 20488531 ~ 20489202 (+) True G24254
TU30396 lncRNA downstream 42377 20489297 ~ 20489756 (+) True G24255
TU30401 lncRNA downstream 45476 20492396 ~ 20492617 (+) True G24258
AMCG00007498 mRNA upstream 12957 20415364 ~ 20428546 (+) True AMCG00007498
AMCG00007499 mRNA upstream 56463 20371214 ~ 20385040 (+) True AMCG00007499
AMCG00007496 mRNA upstream 106132 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007495 mRNA upstream 165697 20268160 ~ 20275806 (+) True AMCG00007495
AMCG00007497 mRNA upstream 190004 20237839 ~ 20251499 (+) True AMCG00007497
AMCG00007509 mRNA downstream 14339 20461259 ~ 20462953 (+) True AMCG00007509
AMCG00007506 mRNA downstream 19806 20466726 ~ 20470825 (+) True AMCG00007506
AMCG00007505 mRNA downstream 25897 20472817 ~ 20487038 (+) True AMCG00007505
AMCG00007504 mRNA downstream 57979 20504899 ~ 20512359 (+) True AMCG00007504
AMCG00007503 mRNA downstream 66813 20513733 ~ 20518119 (+) True AMCG00007503
TU29920 other upstream 1385370 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1871039 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 2149165 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2233195 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2239543 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 613481 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 1834780 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2742540 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3745301 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7636902 28083822 ~ 28094741 (+) True G25822

Expression Profile