RNA id: AMCG00007502


Basic Information

Item Value
RNA id AMCG00007502
length 1386
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00007502
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20487431 ~ 20492501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaaagaaTTAGGGCCCGTCTTTTCCTAAACAGAAAGTCTGCATTTTCAGAGCCAGTGAAgctgaggaaaagaaaatcaaaactgtATACAAAAGAACACGAGCCTGTTAATAATGGCTTGTTCGGAATTCATGTCAACGTCACTGTCTTTACTGTGGCGTTTCGCCTGGCCAACTGCTTCCTTGTCCAGACCAGCTTTGTTCCAGATGAATACTGGCAGTCCCTCGAAGTTTCACACAACATGGTTTGGGTCCCACGCCTGACACATGCTCTACTGGCAGCACTGGCTGATATAAAGCTGTACTCCTTGATAAGAAGACTGGAACATTCAGAGGTTGCCAAATGGGTGTACTTCAGTCAGCTGTGCTCTTGGTTCACATGGTACTGCTGCACGAGAACCTTAACAAACACCGTGGAGACAGTTATCACCACACTGGCTCTCCACTACTACCCACTCCAAGGCTCAGAGACGCAGCACAGATCAAAATACCTGGCCCTGGTTGCTCTGGCTGTCATTATCCGTCCAACTGCTGTCATAGTGCTGCTCACTCTTGGGATTTCCACATTAGTAGACTGTATATTCTATGGCAAGTGGACCCTGGTTCAGCTGAACTTCCTGAAGTTCAATGTCCTTCACAACGTGGCAGAGTTTTATGGATCTCATCCATGGCACTGGTACCTGACCCAGGGTTTCCCCGTTGTTCTGGGACCTCACCTCCCTTTCTTCCTTCACGGATGCACACTGGCTCCAAAAAGATACAGAATATTGCTTTCAGCAGTGGTGTGGACAGTCCTAGTTTACAGCTTGCTAGTGCACAAGGAGTTTAGATTCATCTACCCAGTGCTCCCCTTTTGCATGATCTTCTGTGGGTATTCTCTGGCCAGCCTCAAAGCCTGGAAAAAGCCAGCAGTGTGTCTCCTGCTTATATCAAACCTCCTGCCAGCACTGTACACGGGCCTTATTCACCAGCGTGGGACCCTAGACGTCATGAACCACATCCAGCAGCTCTGTGTCCCCTCCAGCACCCATCTCAGCCCTGATGTGCTCTTCCTAATGCCTTGCCACTCCACTCCTTTCTACAGCCACGTCCACTGTCCtttgaaaatgcagtttctACAGTGTCCTCCTGACCTGACTGGGAACAAAAGTTACGTGGATGAAGCCGAGTTGTTCTTCTCCGACCCAGAAGGTTGGCTGAACACCATGCTGCACACCAAGGCCGCACTGCCCAGCCACCTAGTCTTTTTTGACGTGTTGGAAAAGGAGATTTCTTCATTTCTGGAAGTGAACAGATACATAAAAAGCAAAGAGCTCTTTCACACCCATGTTCCTGAAGGCCAGGTGGGAAGGAGCATCTGTGTGTTTGAAAGGAAAGGCATGTGA

Function

GO: NA

KEGG:

id description
K05286 PIGB; GPI mannosyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30375 lncRNA downstream 20996 20465253 ~ 20466435 (-) True G24243
TU30348 lncRNA downstream 143052 20344039 ~ 20344379 (-) True G24221
TU30344 lncRNA downstream 147522 20337301 ~ 20339909 (-) True G24219
TU30343 lncRNA downstream 147594 20337301 ~ 20339837 (-) False G24219
TU30341 lncRNA downstream 150263 20335071 ~ 20337168 (-) True G24218
TU30419 lncRNA upstream 21285 20513786 ~ 20517409 (-) True G24271
TU30420 lncRNA upstream 21285 20513786 ~ 20517473 (-) False G24271
TU30495 lncRNA upstream 567759 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA upstream 571184 21063685 ~ 21066733 (-) True G24335
TU30598 lncRNA upstream 657773 21150274 ~ 21177594 (-) True G24410
AMCG00007500 mRNA downstream 14512 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007493 mRNA downstream 202230 20268671 ~ 20285201 (-) True AMCG00007493
AMCG00007494 mRNA downstream 265497 20171329 ~ 20221934 (-) False AMCG00007494
AMCG00007489 mRNA downstream 344698 20112050 ~ 20142733 (-) True AMCG00007489
AMCG00007490 mRNA downstream 386710 20061932 ~ 20100721 (-) True AMCG00007490
AMCG00007507 mRNA upstream 95071 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007508 mRNA upstream 113682 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007511 mRNA upstream 155756 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007510 mRNA upstream 221050 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007520 mRNA upstream 722115 21214616 ~ 21224494 (-) True AMCG00007520
TU30382 other downstream 14727 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 155620 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 564278 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1709793 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2428482 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 3479170 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3773323 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4771831 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 5138294 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 14376934 34869435 ~ 34869807 (-) True G26961

Expression Profile