RNA id: AMCG00007505


Basic Information

Item Value
RNA id AMCG00007505
length 4361
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00007505
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20472817 ~ 20487038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTTGCTTGTGGAAAGGGTTGCTGTTGTTGATGGCGATGTTGTGCGAAGCGCAGTTGCGACCGAAGTAACACACAAAAAGCCGTGCAGTTGTAGCTGCCATCTAACGAATTATTCGCTCGAATTTGGGCTGGAGCGCAGCAAACCGGAGCGGTGGGAAAGATGTCTGACAACTCGAGTGACACCGAGTCCTCCTGTGGGTGGACCATCATCAGTAATGAGGGCTCTGACATTGAATCGCTTGGCCCTGAGAATGGGGGAGCTGACCTCGCAGACAGACCGTCCGGTTCGGAAGAAGAAGTGGAAGACCAACCCTCTGTCCTAGGGGGCGAGAGCAGTGAAGAGAGGGCTGAGTCATCTCTTGAAGCCACCCTAAAAGAGGAAATGTTACAAGAGACACTGGCTGTGTCTGagGTTGTGGAAGGGAAGGCCACGGATGAGAATGTGACGTTTGGTTCCTCCAGTGATCACTCTGACATTGTGACGCTGGAGCCATCCAGGGTGGCAGGGCTTGGGGAGTGGCAGGACGGGGAGGGTGAGGACCTGGAGCCAGAGGCCAGCGAGGAACTCTACCTGGGCACTTCCTCCAGCAGTCAGTATGCCTTCAGTGCAGCAGAAACACTGTTTCCGGCTGAGCCACGGGTGGAGGACTCGAGCAGTGACGAATCGAGCGAGCGGCCCGGCCCAGCTGTGCGGAGACGCAGGCTGCGTAGGACCACGGCCTCAGCCTCGGAGACTGAGGAGGGCACTggcggggagagggagagagagtgggagagagagcgagagaatgAGCAGGAACAGCAAGCACTGCAAGCACCGCCTGCTGCAGGACGCGTTGGTGGCACACTCAACAAGTGCATCCTGCTGGCTCTGGTCATCGCAATCAGTATGGGCTTCGGACACTTCTATGGTACAGTGCAAATCCAGGAGAGGCAGAAAATGGTGGAGAAGATCCGTGAGAATGAACTGAATGATGTGAGAGATGATCtgttccagtgccagaaggagCAGGATGCGATTGCAGAGAGTATGGAAGTGGTTAAGCATCTGAAGGAAGACCTAGAAGAAAAGCAGGACATGGTGCTGTCCCTGACAAGCATTAtggataaaataacaaaagagaACCAGCAGCTCAGATTGAAACAGGCTGAGCTACAGTCCCAGAAACATGACCTCACTTTACGTTTGAAGCAAACTGCAGAAGACAGACATTCGATGGAGTCCCAGCAGAAAAACCTTGCGATGGAGAACCAGCATCTGAAGACTTCTCTGGAGCGTGAAGAAGAGTCCCTATCCACACTGCAGGAAGAGCTGAGAAACCTGAGAGCACAGATCAGGAACTTGGAAGAGAGGGGAGCAGGAACGGACTCCATCATCACAGAGAACCAGAAGCTGAAAGATcacctggaggaggagaaggaacgCATCAGCAGCTTCTTGAATCAGAAGGAAACCCTCATGGCAGAGGCCCAGATGCTCAGGAGGGAGCTAGACAGGGAGCGAAGGGTGACTGAAAAGCTCAAAGAGGAGCTGGAGCAGATGAGCCGCACTTCTGAGGACGGGGGAGAAGCAGACCCTGAGACAGAGGAGCTGCAGGCCAGGCTGGCAGAGCTGGAGAAGAAGCTGAACTTTGAGCAGCAGCGCTCAGATCTTTGGGAGAGGTTGTACGTGGAGACCCGGGAGGAGAAGACTAAAGGAGAGAAGCAGAAGTCCAAGAAGCCTAAAGATGGCATGTTCACCAAAGTGAAGGAGACGTTTGATGCAGTGAAGAACTCCACAAAGGAGTTTGTGTACCACCACAAGGAGCAGATCAAGAAAGCCAAAGAAGCCGTGAAGGAAAACCTGAAGAAGTTCTCAGACTCTGTGAAGTCCACGTTCAGGCACTTTAAGGACTCGGCTGCACGCATAATTGACAAAACCCGCAAGCCTCATGAGAGGAGGCACCAGGACAGGAAGGACGGCAGGACTCTCCGAAGAGAGCACCAGCAGCGGCCAGTTGACTACAAAGATCGGGATTCGGCCAAGGCTTCCTGGCAGCATAGGCACCAAAAACCATTGCATAAGCACCCAAGGAAATCGACAGCAGATACCTTTCAGGTTAATCACAACACGCGCAAGTCTGGCGTGAAGCCCTTTAAAGAGGAAGATGACGAACCACACAAGCTGCACAAGGGATGCTCCGGGGTGTTTGACTGTGCATACCAAGAGTCCATGAGCCTGTTTAACAAAGCACTGGATCCCATCAGAGCAGATGAATTCAATCAGCTGATACACAGCTACCTAAAGCAAGAAGTGGACCACTTCCATCACTGGCGAGAATTGGAGAGTTTTATTAACAATTTCTTCCACAATGGAGTCTTCATACATGACCAGATGCTCTTCACAGATTTTGTCAGTGGGGTAGAAGACTATTTAGAAGACATGGATGAGTACCAGCAGTATGATGACGATGTTTTTGAAGATCTGGATGAATATGTGTACAGACACTTCTTTGGTGACACCTATTCGAAGCGATACGGTCCCAGTAGACCCTTTGAAGGGCCagttacaaaaaatacagacaacATGCATCCCAGGCATGAAGTGAAACACCAGCGCAGCCATGCTCGCCCctcgagagagagaaaatggaaCAAACCGGGTCGGACAACTGGGAGACACATGGCCAATGTCAAGATAGAGCTGGGTCCCATGCCCTTTGACCCCAAATATTGAAGCTTGTAGTTTacaggctttattttattgatggcTGATTTTGGATGATATTTAAGTTGCAGTTTGTGTTGGTTGCAATGGATGTCTTTAAAAATCGAAAGCTATTTGGTCaccttttttgtgatttttgctacacaatgtttattttaaaatgcagtttaaaaaaagaaaacacaacagtggCTTAATTGGTTATTGCTTTTCCTGTGTTGTGCAATAATGAGGCATTCTTAAGTCAAACTGGCAGTAGCAAAAGCTTGATGTATACTATTCATTTTCTTGTTGAACATACGTGTGCACTAAATCTTACATCTTCAAAAATAAGTTGCAATACTATTATCTGTAAATTATTGACATcgaaaattaatgttttttttcctttgctttgcGCAGGAAAATGTGATGTTCACAGTGAAAGGTTTTAATATTCTGCTGCTGCAAATAGTTGCTGCTCTTTCTGCTAGATCTACATCTGTGCAAGGGTTGGAAATGCACAGTGCAAGCCTCTTAAGTAATTTCCTTTCCAAGTAGCAGGTTGTGTGGATAGCGTGATTAAATTGGGCATCCCATTTTTACTGTGTAAAGCAAGGGTGTCAAACTTGGGGTTCTTGAGGGCTGCAGTATCTGAGCTGCTGTTCTATCCAAGTCTTTAGTTACTAAAGTGGGTTAATTGATTTGAATAACTGGGCAAATGTAACACTTCTGTTGGGGCCTTACAATCTTTGTGCTGCTGTACTGTACCTGAATCAGAGCACCAATACAACCACcactttatttttagtttgtatttttgcttGGTTTAATGCGTCTGATTTAGCCAATGCTTGGATTAATTAGGCTCAGTAATGGATATTGTCacctggaatgaaaaccaatgAAGTCCAGTGACTTCAGTTTATCAGCCCTGATGTAAAAGTATCTTTGTAAAAACCCTTAGCACGTATTCCTGGATTTGACCACCTAAATTGCTgaccactgaaataaataattattttaagtagtATTTCTGAGTACATTAGCATACTGGGTATGTTATTTCTTCTGTCACATTTGCACTCCTTATGAATGCAAATACCAGTAAATCCTTTCAAATTCTGCTGCATGAAACCACTGAATACGAGTTCAGGACCAAAATGAATGTGCAGTTAattatggggggggggaatacaactgaaaataaaaatgaaaagtgcaATATTATATTCCATTTTGTTCTTCGGTTAAATGCAATGGAGATTTTACCAAGGACTGGGAGGTCTTAAGTTGCTTGCACTATTTTGTGAGAACTTTGATGGATTGTGTGATTTTTGCTGTGTACTGCAGTCTTTGGACTattgtagttattatttatttttgccctCCAATAATTTGCTTCCAAAGTACAATGATTGTGCAAATTTAGTTTCTTTACCAATAACATTCCAATTGTAGCTTTAAACATTGCTGAAGCGGACAGTCATGCTTTGCAATCATGCCAGTGAAAGAGTGAACTTCACAATGGTacctaataaaaatatgaaagtttCTCTGCATTgtcttgtatatattttttctttcttatgcaaatattttgttaaagcgTCACTAATTTTGGTTCTAATCTAGGTTAGCAGTCTAGTTTTCTGTCAGTTCTTCACTTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30347 lncRNA upstream 128430 20344085 ~ 20344387 (+) True G24220
TU30335 lncRNA upstream 133014 20337321 ~ 20339803 (+) True G24212
TU30324 lncRNA upstream 207203 20265393 ~ 20265614 (+) True G24205
TU30321 lncRNA upstream 216415 20256146 ~ 20256402 (+) True G24202
TU30271 lncRNA upstream 367747 20104720 ~ 20105070 (+) True G24167
TU30393 lncRNA downstream 107 20487145 ~ 20487683 (+) True G24252
TU30394 lncRNA downstream 767 20487805 ~ 20488377 (+) True G24253
TU30395 lncRNA downstream 1493 20488531 ~ 20489202 (+) True G24254
TU30396 lncRNA downstream 2259 20489297 ~ 20489756 (+) True G24255
TU30401 lncRNA downstream 5358 20492396 ~ 20492617 (+) True G24258
AMCG00007506 mRNA upstream 1992 20466726 ~ 20470825 (+) True AMCG00007506
AMCG00007509 mRNA upstream 9864 20461259 ~ 20462953 (+) True AMCG00007509
AMCG00007501 mRNA upstream 25897 20441503 ~ 20446920 (+) True AMCG00007501
AMCG00007498 mRNA upstream 44271 20415364 ~ 20428546 (+) True AMCG00007498
AMCG00007499 mRNA upstream 87777 20371214 ~ 20385040 (+) True AMCG00007499
AMCG00007504 mRNA downstream 17861 20504899 ~ 20512359 (+) True AMCG00007504
AMCG00007503 mRNA downstream 26695 20513733 ~ 20518119 (+) True AMCG00007503
AMCG00007512 mRNA downstream 512976 21000014 ~ 21009567 (+) True AMCG00007512
AMCG00007513 mRNA downstream 561881 21048919 ~ 21056851 (+) True AMCG00007513
AMCG00007514 mRNA downstream 573121 21060159 ~ 21066747 (+) True AMCG00007514
TU29920 other upstream 1416684 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1902353 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 2180479 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2264509 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2270857 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 573363 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 1794662 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2702422 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3705183 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7596784 28083822 ~ 28094741 (+) True G25822

Expression Profile