RNA id: AMCG00007509



Basic Information


Item Value
RNA id AMCG00007509
length 1230
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00007509
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20461259 ~ 20462953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGAGAAGGTGGGTTGGATGGCTTAGGAGGGCCAGGCGTGCTCCTGGGAAGCCCTGATAAGAAAAGGCGCAAGTCAAACACACAGGCTTCCTCGTTTCCCCCTCTTTCTGAGTATGCTCCACCACCAAACCCTAGTGCTGATCACCTTGTAGCTGCCAACCCTTTTGATGACAACTACAATACCCCGTCCTTCAAGCCGCTGCCTTCCGGAAATCCGTTTTTTGGCCACCCTCACTACCCTAGCTTCAGTGGGTTTGGCCCTCAAAGGATGCCACCCCATATGGCCCCCAGGATGCCCTCTCCTTATGGAGGCCCCTACCCCATGCGAAACCAACTTCACCCCTTTGCTCAGAATCAAATGGGCATGGGTTTTAATCGGCCTCCTGGCTTTACGGGCTACGGGCATCCTGAGAATCCCGGTTACGGAAACCAGCCAATGTTTAATAACAATATGCCCCTACCTCCCAGTCAGCCTTTTAGGCCCGGCCCTGTCGACAACTTCAACCAAATGCCACCGCACAGTATGAACCAAAACACAAACTCTGACATGGGCCCAAGCTTTGGGCAAGAAAACAGCACCAATGTGAATCCGCCAGCGGGCCCTAGTATGGACCTCAGTCCTGGTTTTATGCAGCCACAGAATAACTGTAGCCAGGCAAATGCTCCTTCCACTCCAAAACAAGACTTTAACGAAGTCCCCAGCAAAAATGTACCTCAGAACTCAGCTCCGCGCAAGGCAAGCCAGAGCCCTGAGGAGAAGGTGTGCCAGGACAGCGCTGACCTGAAAGGTTTCAACCGGAATGCTCCAGTCAATCAGGAAGGCATCCACTCGAACAGTCTGGACAAACTGAATGGCATCCATCCCAGCAATGACACACAGAAAAACCCTCCGCAGCCTTGTGGCCCAGTAGAACAGGCCTCTCTGGagagaagcagcagcagtaagACAGCGGTGCATCCCAACAGACCGAGCCATTCGTCCACAGAGCCTGTTTATCCCTGTGGAATCTGCATGAATGAAGTCAACGATGACCAGGAGGCCATCCTGTGCGAGGCGTCCTGTCAGAAATGGTTCCACAGGATTTGCACAGGAATGACAGAGACTGCATACAACCTGCTGACAGCCGAGGCCTCTGCGGTGTGGGGCTGTGATACCTGCATGGAGGACAAAGGGGTCCAGCTGATGAGAACCAGGGAACTCACAGGACAGCAGTCAGCCAGCAATGATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU30347 lncRNA upstream 116872 20344085 ~ 20344387 (+) True G24220
TU30335 lncRNA upstream 121456 20337321 ~ 20339803 (+) True G24212
TU30324 lncRNA upstream 195645 20265393 ~ 20265614 (+) True G24205
TU30321 lncRNA upstream 204857 20256146 ~ 20256402 (+) True G24202
TU30271 lncRNA upstream 356189 20104720 ~ 20105070 (+) True G24167
TU30393 lncRNA downstream 24192 20487145 ~ 20487683 (+) True G24252
TU30394 lncRNA downstream 24852 20487805 ~ 20488377 (+) True G24253
TU30395 lncRNA downstream 25578 20488531 ~ 20489202 (+) True G24254
TU30396 lncRNA downstream 26344 20489297 ~ 20489756 (+) True G24255
TU30401 lncRNA downstream 29443 20492396 ~ 20492617 (+) True G24258
AMCG00007501 mRNA upstream 14339 20441503 ~ 20446920 (+) True AMCG00007501
AMCG00007498 mRNA upstream 32713 20415364 ~ 20428546 (+) True AMCG00007498
AMCG00007499 mRNA upstream 76219 20371214 ~ 20385040 (+) True AMCG00007499
AMCG00007496 mRNA upstream 125888 20325476 ~ 20335371 (+) True AMCG00007496
AMCG00007495 mRNA upstream 185453 20268160 ~ 20275806 (+) True AMCG00007495
AMCG00007506 mRNA downstream 3773 20466726 ~ 20470825 (+) True AMCG00007506
AMCG00007505 mRNA downstream 9864 20472817 ~ 20487038 (+) True AMCG00007505
AMCG00007504 mRNA downstream 41946 20504899 ~ 20512359 (+) True AMCG00007504
AMCG00007503 mRNA downstream 50780 20513733 ~ 20518119 (+) True AMCG00007503
AMCG00007512 mRNA downstream 537061 21000014 ~ 21009567 (+) True AMCG00007512
TU29920 other upstream 1405126 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 1890795 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 2168921 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2252951 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2259299 18198768 ~ 18201960 (+) True AMCG00007417
TU30494 other downstream 597448 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 1818747 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2726507 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3729268 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7620869 28083822 ~ 28094741 (+) True G25822

Expression Profile