RNA id: AMCG00007510


Basic Information

Item Value
RNA id AMCG00007510
length 2574
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00007510
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 20713551 ~ 20717142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGTAAGAAGGAATAGAAAAAGCTTGAGCAGCCTGGCCCCCTCTGAAGGCAGTTCTGAGGGGGAGCGTACGCTGCACACACTGCGGCTTGGCGCACTGCGCAAACtaagaaaatggaagaaaagcCAAGAATGTGTCTCCTCCGATTCAGAGGTAAGCAACTGGAAGAAAACTCTGGGTATCCGAAGCAAGTCTTTGGACAGAGCGGGACGTCAACAGAGAACAGCAACGCTCGAGCCTGGCTTCAGCTCCACGGGCTGCATCAGTCAGACACACGATGTCATGGAAATGATTTTCAAAGAGCTTCAGGGAATAAGTCAAATTGAAACTGAACTCTCTGAGCTGCGAGGCCACGTCAATGCCCTCAAGCACTCCATTGACGAAATCTCCAGCAGCGTGGAAGTCGTGCAGAGCGAGATCGAACAGTTGCGCTCTGGCTTTGTGCAGTCCAGACGAGAAACGCGTGACATACATGACTACATCAAACAAATCAGTCACCAAGGTAACAAAGTGAGCCTGAGATTCTTAAATGTGCCTGAGGATAAGCAGGAAAAAGTTGAAACACTCATTTACCaaattttaaaagagaaaatgggTTTCGCTGATGCACAGAAGACACTCAAAATTGAACTAGCCCATCGTTTGGGGCAACAAAGAGAATGTCCCAACGCTAAACCTCGGCCCATTATAGTTTTCTTTGCAAATCCACAAGATAGGGATTTAGTATTAAAGAAATGTTATAAATTGAAGGGCACAGGCATATCAGTCTCCACCGACAGCCTTGCTCACGAATCAAAAGAGAGGAAAGACAAAGGCATGACATCTTCTCAGACATATGAAAGCATGGACATCAAGGTGTCAGTGAAAGAGAGGTCTGAGCTGGATGACTGGGACTCCATGGACAGTGATAAAGAGTTAGAAACGGACTTAAATAGGAATAAATATGCAATCATTTCCAAAGCACCATTCAAGAGtaaatctgacaaaaaaaaagcgGAGTCGCATGACACCAGAACCCATGAGAGGTCAGCTTCCGGAAGCGCATATTCCAGCACCGTACAGTATGCCGACGACAGCTTTCAGTCACCTGGATATGATGGCGATGAGAAGCAGACAAAGCCTTATTACACAGATTTAACTCCTGTGTGGCTTTCCCAGAGCGATTACTCCACACCCAAACTTAGCCGTTCAGAATCAGATTTTTCTAAGCTCTGCCAGTCCTACTCTGAGGATTTTTCAGAGAGCCAGTATTTTAGTCGAGCCAATGGATGCTCCCTTTTGTCATCTTCAGATAGAGAACTTTGGCAGAGAAAACAAGAAGACATGGCCTCTTCTTGGTACACTAGCCCACCTAGTCAAAACTTAAGTCAGGAAAATCCACCTTACGTGGAGCCAAATGAAGTGGAAAACACTGAAACCATTGACAGCGGTGTTAGCAATGGACTGGTGTGTATTTCAGGGGACAGAAGCCACTATAGTGATTCCCAGTTGTCTTTGCAAGGTGATCTTTCACCTTGGAAGGATTGGCATCATTTAGAACAAGGTGCTGACTCAGGCCTTGATGCTTCTACTCTGCAGAACGTAGTTTCTGAGGTAAATAGCCCATTTGATCCCATTGCGAATAATTTCccagaaaacattacaaaatgtcaaGAGGTGGACCTTCAAtttgaaggagaaggagagaattATATGACACTTGGAAGCAGTTCCTCAACTTGCCCGGGATTCGAGAGTGAAACTGTGAGTCAGCTGGATGCCCAGAGTGACCCTTACCCAGAATCCAATGCAAATCATTTCTATCAAACCCCAAACAGGTCCTCAATCATGTACCGTAGTCAGAGTGAAATCAGGAGTGACAATTGTGAGGAAGTGCCCAAATCATGGCATAGCAGGCTTAGCATAGACTTGACTGATAAAACATTCAGCTTCCCTAAATTTGGATCTACTCTCCAGCGGGCCAAATCCGCACTAGAAGTGGTGTTTACCAAAAGCAGCCAGAGCCTGAGTGCTGCGGAGGAGCCAAGCAATTCTACATTCATGGGCCGATTTAGGACTTTGTCGCAGTCGACCGCAAATGACTCCAGTACAACAATTAATTCTGATGTATACACTGAGCCTTACTACTACAGGGCAGATGATGAAGAATATAGTGAACAGGCAGTCGACAATGAAACAGATTATGTTGAAGTTATGGAACAAGTGCTTGCCAAACTGGAGAATCGGACAAATGCAAATGATCCCGAGGAACAATACCAATCGTACGATGTCTCTCAGGAAGGAAATTATGTGCTGGAATATGATTGTAGCTACGATGAGCAGTATGATACCCCGTATAGTGAGGAATATGATGATAACGAATTAGCAGGAGAAACACCAGAGTTTGAATCATTATTATATGTGGAAGAGACTGAGGAAAAGGAGGATGAAAACCAAAATATCCCAGAAGAAACAGTGGAGATTCAACCCAAAAAGAGGATACGACCCACCTTCAAAGAAGCAGCATTGAGGGCATATAGAAAGCAGATGGCAGAACTGGAAGAAAAGCTGCTTGCTGGAGTTACTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30420 lncRNA downstream 196078 20513786 ~ 20517473 (-) False G24271
TU30419 lncRNA downstream 196142 20513786 ~ 20517409 (-) True G24271
TU30375 lncRNA downstream 247116 20465253 ~ 20466435 (-) True G24243
TU30348 lncRNA downstream 369172 20344039 ~ 20344379 (-) True G24221
TU30344 lncRNA downstream 373642 20337301 ~ 20339909 (-) True G24219
TU30495 lncRNA upstream 343118 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA upstream 346543 21063685 ~ 21066733 (-) True G24335
TU30598 lncRNA upstream 433132 21150274 ~ 21177594 (-) True G24410
TU30594 lncRNA upstream 463779 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA upstream 463779 21180921 ~ 21182093 (-) False G24409
AMCG00007511 mRNA downstream 37217 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007508 mRNA downstream 95389 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007507 mRNA downstream 124352 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007502 mRNA downstream 221050 20487431 ~ 20492501 (-) True AMCG00007502
AMCG00007500 mRNA downstream 240632 20462504 ~ 20472919 (-) False AMCG00007500
AMCG00007520 mRNA upstream 497474 21214616 ~ 21224494 (-) True AMCG00007520
AMCG00007521 mRNA upstream 540436 21257578 ~ 21264539 (-) True AMCG00007521
AMCG00007526 mRNA upstream 605090 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007527 mRNA upstream 637378 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007529 mRNA upstream 680544 21397686 ~ 21402540 (-) True AMCG00007529
TU30382 other downstream 240847 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 381740 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 790398 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 1935913 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 2654602 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 3254529 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3548682 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 4547190 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 4913653 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 14152293 34869435 ~ 34869807 (-) True G26961

Expression Profile