RNA id: TU30494


Basic Information

Item Value
RNA id TU30494
length 1370
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00007514
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21060159 ~ 21066783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTTTTGCGGGAGGAGGTATTTGAGACAGCGAGTTGGGAGTGAGAGGGAAGCTTCCTATTTTCTcccatttgtttccatttatttacaGTCATGTCTGGGGAGATGGAAGAAACAAAGACCATCGAAGAAGCATCAACCGAAGAGCAGCGGGAAATGGAGGATAAGGTGATCAGCCCTGAGAAGGTGGAAGAGGCGAAGCTGAAAGCTCGGTATCCTCACCTCGGTGCCAAGCCTGGGGGCTCAGACTTCCTCAGGAAAAGACTTCAGAAAGGGcaaaaatattttgattctgGGGACTACAACATGGCGAAGGCCAAGATGAAGAACAAGCAACTACCTACTGCCACTGCAGAGAAGGCGGAGATAACTGGAGACCACATCCCCACACCGCAAGACCTGCCTCAGAGAAAACCCTCTCTCGTTGCTAGCAAGCTGGCAGGTTGATGGGAGCTTTACGACTGCACTGCTTTTGTTCTCATTCCTCTTTTCTCATCCCTGTTATTGTCCCCCTTCATCtattagttttcttattttctttgtatttttttttctttttatacttCCATTGATAAGCGCTCTAAGAACACTTGACTGGTAGGCAGATTCCAGTAACTAGTGCTGCTTAAGGAGAAGTTCACAAAGTGTAGTACCTGGAATAGATGCTGAGGAAGAATCCTAAAGCTTGCAAAGTTATACTTGAtggtttaaatgtactgtagttTTTGATTGAAAGTGTACATATTTCCTAGTGTTTGGAGTGATGGCAGGAGTCAACATTTTagaaagttttacatttttactgtaTCATTCCTTATCTTCATCTAAATTATGAAGTAATGTGcttgaattatttaatataatcttCAATTATGTACGtctttccccctccccccatcacACCCTTATTACTGctatgttctttgttttatatattaagaaataaagaatggacCATACAGATATTGCAGCAGAGTAATGttatggagaaaaaataataatctgaaaatcAAAAAAAGAGCATGTGTGAAACTAGGTTCTAACAGGTTGGTGTTTGCTTGCCTAAAATCTTGAATTTCAAAAATGGCCTTAAACCTCATTCAGCTTTATCAATTGCAGTTTTTCTTGGGCAATATTTGTCCACCCTGGAAAAATCCTTGTGAACCTAGTCCTGAATGTGTgctgaaaactatttaaaaccaTTCTCATTTAGGTTTTCTAGCTGGTAACTCACTAAGGAAATGTTTGAAGTGTGCATGTGCATAGACTGTGCAGTCACATTTGTGccattttttgtaaataaaatagttttgcacAAATGCCCtcacttgcattttattcattgCCTGAAACTGCTAAGTAACACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30470 lncRNA upstream 179477 20880546 ~ 20880924 (+) True G24311
TU30469 lncRNA upstream 183616 20876584 ~ 20876785 (+) True G24310
TU30397 lncRNA upstream 566396 20492904 ~ 20494005 (+) True G24256
TU30401 lncRNA upstream 567784 20492396 ~ 20492617 (+) True G24258
TU30396 lncRNA upstream 570645 20489297 ~ 20489756 (+) True G24255
TU30569 lncRNA downstream 319442 21386225 ~ 21398047 (+) True G24384
TU30809 lncRNA downstream 1065252 22132035 ~ 22134704 (+) False AMCG00007547
TU30811 lncRNA downstream 1078056 22144839 ~ 22147346 (+) True G24570
TU30812 lncRNA downstream 1078056 22144839 ~ 22148238 (+) False G24570
TU30852 lncRNA downstream 1122462 22189245 ~ 22203939 (+) False AMCG00007554
AMCG00007513 mRNA upstream 3550 21048919 ~ 21056851 (+) True AMCG00007513
AMCG00007512 mRNA upstream 50834 21000014 ~ 21009567 (+) True AMCG00007512
AMCG00007503 mRNA upstream 542282 20513733 ~ 20518119 (+) True AMCG00007503
AMCG00007504 mRNA upstream 548042 20504899 ~ 20512359 (+) True AMCG00007504
AMCG00007505 mRNA upstream 573363 20472817 ~ 20487038 (+) True AMCG00007505
AMCG00007516 mRNA downstream 19203 21085986 ~ 21125981 (+) True AMCG00007516
AMCG00007518 mRNA downstream 64457 21131240 ~ 21146416 (+) True AMCG00007518
AMCG00007519 mRNA downstream 84794 21151577 ~ 21159558 (+) True AMCG00007519
AMCG00007515 mRNA downstream 96037 21162820 ~ 21177602 (+) True AMCG00007515
AMCG00007517 mRNA downstream 114067 21180850 ~ 21186026 (+) True AMCG00007517
TU29920 other upstream 2004268 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 2489937 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 2768063 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 2852093 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 2858441 18198768 ~ 18201960 (+) True AMCG00007417
TU30868 other downstream 1214917 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 2122677 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 3125438 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 7017039 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 7386226 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_07527725_07535631.mRNA False 1983 mRNA 0.40 4 CI01000028 7526150 ~ 7535631 (-)