RNA id: AMCG00007521


Basic Information

Item Value
RNA id AMCG00007521
length 2304
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00007521
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21257578 ~ 21264539 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCTAACCAGCCACCTCCCATCATCTGGACTTCATTATCAATGTACAAGGACCACGACATCCGCTCGGAACGCCAGCTCCGCTTTCTGGACACGCCGCTCCCTGCAGCCTCGTTCCCGCATTTCACGAGCAGGAAACGAGTACTTCACCCGCCGCGGACTTCCGCTCTGAGGCTGGCTGTGAAAATGGCGGACATGGATGATTTGTTCGGGAGTGATGGCGACAGTGATAACGAGCAGAGAGACTCTGGCTCCGGATCCGGGTCAGGCTCTGACTCTGAGCAGGAGAGGCCTAGGTCTGTGAGTAATGGCTCGGGGAGCGACAGTGAACGGGAGGACCGAAACGACGACGAGGAGGATGGGGAAGGGCAGGAGGCAGGCAAGCCCAGCAACAAGGAGCTGTTTGGAGATGACAGCGAGGAGGAGCATGGCAGCCAACACAGCAGCAGCGAACACCGGTCTGAGAGGTCAGACAACCAGTCGGAGGCCAGCGTCCACTCTGAGCAGGAGGACAACGAGCACTCGGACGTGGACCAGCACAGCGGCTCGGAGGGGcggcaggaggaagaggaggaggacgatGATGAGAGGGGGCACAGGTCTGATGTGGGCAGCCCCCAGTCTGAAGTAGCCAGCCATCGATCTGAGGCGGGGAGTCCCCACTCTGAGGCTCCCAGCCTTCACTCAGAGGTGGCTAGTGCTCACTCTGATGCTGGTAGTGTCCATTCGGAGCCCGCCAGTCCTCACTCCGATGCTGGCAGTGCCCGTTCAGAGGCTGGGAGCCCTCGCTCAGAACCTGGGACTCCCAGATCTGGGCCCACCACCCCCCACTCTGAGGCAGAGGTGTCTGGGAAAGAAGTCCACTCTGAGGATGAGAAGTGGGACATGGAGGCTAAGAGCGACCAGTCAGACGACGAGGAAAAGCCCCAGCATTCAGACGAGGAGCGCGGGCACTCGGACGATGAAGGTGAAGAGCAAGCGCATAAATCAGGCAGTGACAGCGAAGACGACTTTGTCAGACAGAAGCACAAGAAGGCAATTGCATCCGATTCGGACTCGGATAGTGACGCTGGAGGACAAAAAGAAAGCAAACCTGCAGCGGATGACCTGTTTGGAGAAGCCGATGACATTTCCTCAGACAGTGATGCAGAGAAGCCCCCTACTCCAGGACAGCCACTTGATAATGAAGACGGCATGGACACTgagcagcaggaggaagagcCCGTACCTGAGACAAGGATAGAAGTAGAGATTCCCAAAGTCAACACAGATCTGGGAAGTGATCTCTACTTTGTCAAACTGCCTAATTTCCTCAGTGTGGAACCCAGACCTTTTGACCCACAGTACTATGAGGATGAGTTTGAAGATGAGGAGATGTTGGATGAAGAAGGCAGAACCAGGCTAAAACTGAAGGTTGAAAACACAATTCGATGGAAGACACGAAGAGACGAGGAGGGCAGTGAGGTTCGGGAAAGTAATGCACGCATTGTGAAGTGGTCTGATGGGAGCATGTCTTTGCACTTGGGGAATGAAGTGTTTGATGTCTACAAGGCTCCACTACAAGGAGATCACAACCATCTCTTCATCCGACAGGGAACTGGGCTGCAGGGGCAAGCCGTGTTCAAAACCAAGCTCACTTTCAGACCTCACTCTACAGACAGTGCTACTCACAGAAAGATGACCCTGTCCCTAGCTGACCGCTGTTCAAAGACTCAGAAGATCCGGATCTTGCCGATGGCAGGCCGGGACCCGGAGTCGCAGCGTAATGAGATGATTAAGaaagaggaggagagactGCGTGCGTCGATCCGCCGGGAGTCCCAGCAGCGCAGGATGAGGGAGAAGCAGCACCAGCGAGGGCTCAGTGCCAACTACCTGGAGCCGGACCGCtacgaagaggaggaggagggggaggagtcCATTAGCCTGGCTGCCATCAAGAGCAAATACCGGGGGGGCGGCGGGGTGAGAGAGGAGCGGGCCAGGATTTATTCTTCAGACAGCGACGAGGGCTCGGACGATGACAAAGCCCAGAGGCTGCTGAAGGCCAAGAAACTGGACAGTGATGATGAAGGAGTTAGTCCCGGAAAGAGGAAGGctgatgatgaagaagaaacaTCCACAAAGAAGGCCAAGAAATATGTCATTAGTgacgaagaggaggaggacgatGAATAATTTTGTAACAGTCCTATTCTTTTGTCAATTTATCTAGATGTTAGAGATGCttactttttttaatagtattaaatcatttttgtttgtacagCTCAGGTAAATAAACTGATTGAGTcacttatg

Function

GO: NA

KEGG:

id description
K15177 LEO1; RNA polymerase-associated protein LEO1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30594 lncRNA downstream 71417 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA downstream 75485 21180921 ~ 21182093 (-) False G24409
TU30598 lncRNA downstream 79984 21150274 ~ 21177594 (-) True G24410
TU30495 lncRNA downstream 190845 21060260 ~ 21066733 (-) False G24335
TU30496 lncRNA downstream 190845 21063685 ~ 21066733 (-) True G24335
TU30623 lncRNA upstream 31839 21296378 ~ 21375032 (-) True G24430
TU30680 lncRNA upstream 446983 21711522 ~ 21718039 (-) True G24464
TU30688 lncRNA upstream 491052 21755591 ~ 21755946 (-) True G24469
TU30689 lncRNA upstream 493348 21757887 ~ 21758169 (-) True G24470
TU30725 lncRNA upstream 541581 21806120 ~ 21807061 (-) True G24503
AMCG00007520 mRNA downstream 33084 21214616 ~ 21224494 (-) True AMCG00007520
AMCG00007510 mRNA downstream 540436 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007511 mRNA downstream 581244 20648257 ~ 20676334 (-) True AMCG00007511
AMCG00007508 mRNA downstream 639416 20606183 ~ 20618162 (-) True AMCG00007508
AMCG00007507 mRNA downstream 668379 20587572 ~ 20589199 (-) True AMCG00007507
AMCG00007526 mRNA upstream 57693 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007527 mRNA upstream 89981 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007529 mRNA upstream 133147 21397686 ~ 21402540 (-) True AMCG00007529
AMCG00007530 mRNA upstream 160394 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007535 mRNA upstream 496129 21760668 ~ 21769423 (-) True AMCG00007535
TU30382 other downstream 784874 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 925767 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1334425 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 2479940 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3198629 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2707132 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 3001285 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3999793 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 4366256 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 13604896 34869435 ~ 34869807 (-) True G26961

Expression Profile