RNA id: AMCG00007529


Basic Information

Item Value
RNA id AMCG00007529
length 1602
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00007529
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21397686 ~ 21402540 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCCCCAGCAAAACATGTGGTGCTGAAGAAGTCTGCAATATCTTCACAGCATATCTCTTCTACAACATTCCTAAAATGAAACAGGTACCATTGAAAGAAGTGATGGCGAAGATGCTAATTCCAGTTCAGCAAAACATCACAGATGTGTCGCCGGAGATGATGTCTGGTGCTACAGCAACGCTCTTGGTCCTGCTGGGTCTGCTTATGGTGGCATGGAATTGTGGAGCTAAATCCTCCATACCAGGTCCGGGTTTCTGTATGGGAATTGGGCCCTTTGTTTCATACACCAGATTTTTATGGACTGGAATAGGGACAGCAAGCAATTACTACAATGACAAGTATGGAGATATCGTGAAGGTCTGGATTAATGGAGAGGAAACACTCATTATTAGTAGGTCCTCTGCTGTCTATCATGTGCTGAAAAATGGACAGTACATATCACGTTTTGGAAGTAAACAAGGACTGCAGTGTGTTGGGATGCATGAAAATGGTATCATTTTTAACTGTAATGTAACTCTTTGGAAGAAAACACGAACCTATTTTGCCAAAGCTCTGACAGGGCCCTGCCTGCAGCAGACGCTAGCGGCCTGCACACTGTCCACCAACACGCACCTGGATGGACTGGCGGGCAACACTGACCACGAGGGCCGCGTGGATGTCCTGCACTTCCTGAGATGCACCATCTTAGATATAAATAACAAGCTGTTTCTGAGACTCCCGCTGGATGaaaaggaGATTGTGCAAAAAATTCAGAGGTATTTTGACTCTTGGCAAGCACTCCTTATTAAGCCAGACATCTTCTTCAGATTCAAGTGGatgtataataaacataaaagtgCAGCacAGGAGTTACCAGAAGTCATTGAGAACCTGGTTGAGGTCAAACGAAAGGCACTCCACGAAGCAGAGAAGCTGGATGACATCGATTTTGCTTCAGACTTGATATTTGCTCAGAATCATGGAGAGCTGTCTGCAGACAACGTGAGGCAATGTCTGCTGGAGATGTTGATAGCAGCACCTGACACGATGTCTCTCAgcctgtattttatgttaatgctCCTCAAACAGCACCCCGAGGTCGAACAGAAACTACTGGACGAAATTGATGCTTTAATAGGGGATAAAGAATTGCAAAACAGCGACTTACAGAATTTAAAAGTGCTGGAGAATTTTATCAACGAGTCTCTGAGATTTCATCCCGTGGTGGACTTCACAATGAGGAAGGCATTAGCAGATGATGTCATCGAGGGCTACAGGGTGAAGAAGGGAACCAACATCATTCTGAACATGGGACGAATGCACAGGGGGGCCTTCTTTCCAAAGCCACACGAGTTCAGCCTGGGGAACTTTGAGAACAACGTGCCCAGCCGTTTCTTTCAGCCATTTGGCTCTGGGCCCAGGTCCTGTGTTGGGAAGCACATGGCCATGCTGATGATGAAGGTGATCTTGGTGACTCTTCTGCAGCGATACACAGTTTGTCCTCAGGATGGCTGCACTTTCCACGACATCAAGCAGACCAACAATCTCTCCCGGCACCCTGTTGAAGAGAGCAACAGCCTGGACATGTTGTTCATTCCCAGACAAAAATCGAACAAATAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07434 CYP19A; aromatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30623 lncRNA downstream 22654 21296378 ~ 21375032 (-) True G24430
TU30594 lncRNA downstream 211525 21180921 ~ 21186161 (-) True G24409
TU30596 lncRNA downstream 215593 21180921 ~ 21182093 (-) False G24409
TU30598 lncRNA downstream 220092 21150274 ~ 21177594 (-) True G24410
TU30495 lncRNA downstream 330953 21060260 ~ 21066733 (-) False G24335
TU30680 lncRNA upstream 308982 21711522 ~ 21718039 (-) True G24464
TU30688 lncRNA upstream 353051 21755591 ~ 21755946 (-) True G24469
TU30689 lncRNA upstream 355347 21757887 ~ 21758169 (-) True G24470
TU30725 lncRNA upstream 403580 21806120 ~ 21807061 (-) True G24503
TU30743 lncRNA upstream 540412 21942952 ~ 21943671 (-) True G24515
AMCG00007527 mRNA downstream 40685 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007526 mRNA downstream 62296 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007521 mRNA downstream 133147 21257578 ~ 21264539 (-) True AMCG00007521
AMCG00007520 mRNA downstream 173192 21214616 ~ 21224494 (-) True AMCG00007520
AMCG00007510 mRNA downstream 680544 20713551 ~ 20717142 (-) True AMCG00007510
AMCG00007530 mRNA upstream 22393 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007535 mRNA upstream 358128 21760668 ~ 21769423 (-) True AMCG00007535
AMCG00007545 mRNA upstream 408940 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007544 mRNA upstream 495827 21898367 ~ 21918778 (-) True AMCG00007544
AMCG00007540 mRNA upstream 523409 21925949 ~ 21942925 (-) True AMCG00007540
TU30382 other downstream 924982 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1065875 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1474533 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 2620048 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3338737 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2569131 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2863284 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3861792 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 4228255 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 13466895 34869435 ~ 34869807 (-) True G26961

Expression Profile