RNA id: AMCG00007537



Basic Information


Item Value
RNA id AMCG00007537
length 930
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00007537
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22050281 ~ 22052621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGTCTAAGCCCGCTGATGCCGGAGATTTAACGAAATGTGCTGATGTGTGCAGTCGGGAGAAATTGACGTGTTTGATCGCTCCGGATAGTCGGACCCGGGCAAAGGCACGGTGTGATGCCGCCGCGGAGCCTCTGCAGGGCCTGAAGTTGGCATCCCACGCAGTGCTGCACCGCGCACAGCTGAGAGGCAGATTGAAATGCGGTAAATGCAGCGGTTCAAGGATGTTCTATTGCTACACGTGTTTCTCTTTAGTAGGTGTGAGTCAGGAGGAAATCCCCCAAATCAAGcttcCTCTGAAGATTGATATTATCAAACACCCAAACGAAACGGACGGCAAGAGCACTGCAGTGCATGCTAAACTCATAGCCCCAGATGACGTTACCATCTACACTTACCCTTGCATCCCTGATTATGAGgatgaaaaacacaaaGTTGCATTAGTTTTCCCAGGTCCAGGTTCACTAACGATTGAAGAGTTAACAGAACAGCTTGTAGCCGCTGCAAAGAGAGCTCGGGATACCTCAACAGATGAGCCAGCAGTGAAGAGAATGAAGTGTGAGAGCAAGCCAGAAGATGGAAAATCATCTTCAAACCAACCAACTGAGCAGGAGAAAAGCAGTCCGTTAAAGAGAATATTGTTTATCGATAGCACTTGGAACCAGACAAACAAAATTATCACTGATGAACGGCTTCAAGCCTTGCCTCAGGTTGAACTGAAAACCAGGAAGACCTGTTTCTGGCGTCACCAGAAGGGAACTCCGGACACTTACCTCTCCACAATAGAGGCCATCTACTATTTCCTGAGAGACTATACTGAACTGTGTTTATCTCCAGAGTACCTGGGAGAGTATGACAATCTGCTCTTCTTCTACTCATTCTTGTACAAGCTGATCAACAAAGCAAAGCACACTGCTGGGAAACTGTGA

Function


GO: NA

KEGG:

id description
K25070 DTWD1; tRNA-uridine aminocarboxypropyltransferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU30569 lncRNA upstream 652234 21386225 ~ 21398047 (+) True G24384
TU30470 lncRNA upstream 1169357 20880546 ~ 20880924 (+) True G24311
TU30469 lncRNA upstream 1173496 20876584 ~ 20876785 (+) True G24310
TU30397 lncRNA upstream 1556276 20492904 ~ 20494005 (+) True G24256
TU30401 lncRNA upstream 1557664 20492396 ~ 20492617 (+) True G24258
TU30809 lncRNA downstream 79414 22132035 ~ 22134704 (+) False AMCG00007547
TU30811 lncRNA downstream 92218 22144839 ~ 22147346 (+) True G24570
TU30812 lncRNA downstream 92218 22144839 ~ 22148238 (+) False G24570
TU30852 lncRNA downstream 136624 22189245 ~ 22203939 (+) False AMCG00007554
TU30854 lncRNA downstream 136624 22189245 ~ 22203939 (+) False AMCG00007554
AMCG00007536 mRNA upstream 16373 22033242 ~ 22033908 (+) True AMCG00007536
AMCG00007538 mRNA upstream 42660 21984244 ~ 22007621 (+) True AMCG00007538
AMCG00007532 mRNA upstream 243224 21803173 ~ 21807057 (+) True AMCG00007532
AMCG00007534 mRNA upstream 249629 21781383 ~ 21800652 (+) True AMCG00007534
AMCG00007533 mRNA upstream 290098 21755790 ~ 21760183 (+) True AMCG00007533
AMCG00007548 mRNA downstream 71026 22123647 ~ 22129477 (+) True AMCG00007548
AMCG00007547 mRNA downstream 78952 22131573 ~ 22134714 (+) True AMCG00007547
AMCG00007546 mRNA downstream 101056 22153677 ~ 22158549 (+) True AMCG00007546
AMCG00007549 mRNA downstream 109583 22162204 ~ 22174755 (+) True AMCG00007549
AMCG00007554 mRNA downstream 138782 22191403 ~ 22203951 (+) False AMCG00007554
TU30494 other upstream 983498 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 2994148 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3479817 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 3757943 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 3841973 18207078 ~ 18208308 (+) True G23698
TU30868 other downstream 229079 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 1136839 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 2139600 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 6031201 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6400388 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile