RNA id: AMCG00007540


Basic Information

Item Value
RNA id AMCG00007540
length 1749
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00007540
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21925949 ~ 21942925 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGAAAATTACCCCCTCAGCTTCAAGGGAAACATATTGCATGTAGGACTCTTTGGACAAGCAGGCATGCTCCACAGGACCAAGTACAGCCGTTTCCGCAATGACTCGGTCACCTCCCTGGAAGAGGGCAGCCACGCCGCTGCACTGGCTGTGAGTGCCAAGGCTCCCTCCCTGCCCTCTCCCTGCCCGACTTCAATAGCCACCTCTCCCGCCGACCAGACGTGCCTGGGCTCTCCGGACGATGGCTCCACTACTCTGTGTACTTTCATCCCCAAGATGGCTAACATCAAACTCTCTAACCCGGCCACGCTGCTTGGGCTCAAAGGCTCGACTCTGCCCTCCTCCAAAGATGTGCCCAGAACCAAACTGAGTGGCAGCAGCAGGGCGGCCTTGGGCAGCCTAGTGGACCCCGAGATCAGGCTGACCAGTTACCTGTCTGCCCCCTCTTATCTGCAAGAGGACGTTACCCTTGACAAACTGACCTCCATGGGCACCAGCAGCCCCTCGGTAGGGCTCAGGGAGATGAGAACTGAGGCTCTCACCTTAAACAAGACAGCAGGAGGCACTGAATGCAGTGGGCAAGAGATCCTGGAGACGGGGATGACCTACTACACTAAGTACATCGGCTGTCTGGAAGTGCTCCAATCAATGAGGATGCTGGACTTTGGAACAAGAACGCAGGTCACAAGggAAGCTATAAGCCGGCTGTGTGATGCTGTACCATGTGCAAAAGGGCCAGCAAAGCGGAGGAAGcCACCAAGCAAAGGACTGTCTGCAGTTCTGGGCAAAAGCAATCTGCAGTTTTCCGGAATGAATGTTAAACTGACAATCTCTACAAACAGTCTGAGTTTAACTACTGTCGATTCTCAGCAGATTATTGCCCAGCATCACATGCAGTCCATTTCATTTGCCTCCGGAGGAGATCCTGACACTACAGATTATGTTGCTTATGTTGCCAAAGATCCAGTAAATCAAAGAGcatgTCATATTTTGGAATGTCCTGATGGATTGGCACAGGAGGTTATAAACACTATAGGACAAGCCTTTGAACTTCGCTTCAGACAGTTCTTAAATAACCCCTCTTCCCTTATTGCCACAAAGCAGAGCAGTGGCCGGGCAGTTGAAGCAGACTGCAGTGCCTGGGCTGTGGAGGGCACCGAGAGCCATGAGTATTACAACGAGATCCCAGGCAAAGAACCACCTCCGGGGGGGATTCTGGACATGAGACTGAGAGTGGAATCGGTCTTCAAGCCTCCGGGCAGCGGCCAGCCCGAGGACGAACAGCGGAGATGGAATGGCAGCCCACAACACCCCAATGTGTATGAAAACTGTTCCCTGACACAAAAGCAGCTCTTTCCTACTGTAGAAAGCACCGAGGTGGTGTACAGCAGTCTGGCAGAGAGCGGCTCTCTGTCCAGTGTCCTGCACCACATCCAGGAGCTGCTTCAGAATGAGGCATGGTACCATGGAAAGATGAGCCGCAGGGAGGCCGAGCGCCTGCTCACCGACAACGGAGACTTCCTCGTGAGGGAGAGCACGACCACGCCAGGACAGTACGTGCTGAGCGGCCTCCAAGGAGACACTGCCAAACATTTACTGTTGGTGGACCCAGAGGGAATGgTCAGGACGAAAGATCACATTTTTAACAGTGTGGGACATCTTATTCGGTACCATATGGACAATCAGCGACCGATCATTTCTTCTGGGAGTGAACTCTGCCTGAAGCAGCCTGTCGTACAGAAGCAG

Function

GO: NA

KEGG:

id description
K17449 SHC4; SHC-transforming protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30725 lncRNA downstream 118888 21806120 ~ 21807061 (-) True G24503
TU30689 lncRNA downstream 167780 21757887 ~ 21758169 (-) True G24470
TU30688 lncRNA downstream 170003 21755591 ~ 21755946 (-) True G24469
TU30680 lncRNA downstream 207910 21711522 ~ 21718039 (-) True G24464
TU30623 lncRNA downstream 550917 21296378 ~ 21375032 (-) True G24430
TU30743 lncRNA upstream 27 21942952 ~ 21943671 (-) True G24515
TU30786 lncRNA upstream 62809 22005734 ~ 22009433 (-) True G24551
TU30830 lncRNA upstream 188464 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA upstream 188464 22131389 ~ 22133981 (-) False G24579
TU30913 lncRNA upstream 317922 22260847 ~ 22262493 (-) True G24640
AMCG00007544 mRNA downstream 7171 21898367 ~ 21918778 (-) True AMCG00007544
AMCG00007545 mRNA downstream 45646 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007535 mRNA downstream 156526 21760668 ~ 21769423 (-) True AMCG00007535
AMCG00007530 mRNA downstream 472532 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007529 mRNA downstream 523409 21397686 ~ 21402540 (-) True AMCG00007529
AMCG00007539 mRNA upstream 9760 21952685 ~ 21973858 (-) True AMCG00007539
AMCG00007541 mRNA upstream 33368 21976293 ~ 21981921 (-) True AMCG00007541
AMCG00007542 mRNA upstream 99530 22042455 ~ 22048365 (-) True AMCG00007542
AMCG00007543 mRNA upstream 106828 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007551 mRNA upstream 126717 22069642 ~ 22118102 (-) True AMCG00007551
TU30382 other downstream 1453245 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1594138 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2002796 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3148311 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3867000 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2028746 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2322899 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3321407 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3687870 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12926510 34869435 ~ 34869807 (-) True G26961

Expression Profile