RNA id: AMCG00007542


Basic Information

Item Value
RNA id AMCG00007542
length 783
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00007542
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22042455 ~ 22048365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGACTGGCCAATTGCCCTTAATGAGAGCGTCCAGTTAAGAAAACAGTTGGATGGTTACAGTTCACCTGATGACATAGCTGACCGTCTCCATAAGGAAGCCCCAATGGAAACGGGGATCATCATTTCTTTGGAGCAACGGGTTGAAGTGTTATCCTCCCAAGTTGAAAACCATGCTGCTAAAATCCTGAGCTGTCAAACAACACCATTGAGGACTGACGACCAGCCTGCTGGGGTATCGCCTCAGCGtcattttaaggtTTCTGAAAAAGACACGGAGAAATCTCAGAAAAAAGGATTTACACTGAATGAATGGGCAGACTTGCCTGGACAACTTGATGCTTTACTCctgatgaactgcatttcagaaaaccaaaattatacaGCATCAGTGGCAGTCTTTAAGGATGCCTTTTGGTGGTTTTATCTACATACATTTAAGCCTAATCAAGAAGATGAAGACCGGCTTTTTGATCGAATTGCTGAAAGCTTTGTGGCACTCTTAATAACTGTGGAATTGGATGTGAAAGACAGGTTGTTTAAGGTCTACGCAGACTGCTTAACACAGGCAGTATATTCTGTGTTCTATGAAGCTTTTCCAGAGTCTCGAGATTGTATTGATGAACagtttaaaactgaattaactgACCTGATCTCTCATTGGGTTACAGgaatGAAGCCTTTTCCCTTTACATGGAAGAAATGGAAACTAAATTGGTTGTGTCAGTTAGCGAATGGAGCCtcagagatggaaaaagaaTATAAGACCTTCTCAGCTGTGAAT

Function

GO:

id name namespace
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30786 lncRNA downstream 33022 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 98784 21942952 ~ 21943671 (-) True G24515
TU30725 lncRNA downstream 235394 21806120 ~ 21807061 (-) True G24503
TU30689 lncRNA downstream 284286 21757887 ~ 21758169 (-) True G24470
TU30688 lncRNA downstream 286509 21755591 ~ 21755946 (-) True G24469
TU30830 lncRNA upstream 83024 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA upstream 83024 22131389 ~ 22133981 (-) False G24579
TU30913 lncRNA upstream 212482 22260847 ~ 22262493 (-) True G24640
TU30958 lncRNA upstream 307085 22355450 ~ 22358446 (-) False AMCG00007565
TU30974 lncRNA upstream 383702 22432067 ~ 22432313 (-) True G24687
AMCG00007541 mRNA downstream 60534 21976293 ~ 21981921 (-) True AMCG00007541
AMCG00007539 mRNA downstream 68597 21952685 ~ 21973858 (-) True AMCG00007539
AMCG00007540 mRNA downstream 99530 21925949 ~ 21942925 (-) True AMCG00007540
AMCG00007544 mRNA downstream 123677 21898367 ~ 21918778 (-) True AMCG00007544
AMCG00007545 mRNA downstream 162152 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007543 mRNA upstream 1388 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007551 mRNA upstream 21277 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007550 mRNA upstream 96384 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007552 mRNA upstream 129101 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007558 mRNA upstream 227746 22276111 ~ 22288236 (-) True AMCG00007558
TU30382 other downstream 1569751 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1710644 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2119302 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3264817 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3983506 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1923306 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2217459 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3215967 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3582430 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12821070 34869435 ~ 34869807 (-) True G26961

Expression Profile