RNA id: AMCG00007544


Basic Information

Item Value
RNA id AMCG00007544
length 4779
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00007544
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21898367 ~ 21918778 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatgcaacattttcttttgaggGCTACGAGCCAGGCTACAGTCAGGAGCAGTACCACGGAGAGTATGCGTATGGAGATGAATCTGAGCAGTTCAATGGGCATGACAGTCTGCTTCACGATGCACACCCCCGTGTGTGGACTGAGCCACATGCAGAAGGCCACGAGTACATGTATGACCAAAGGGGCTTTGGTTACCCCAGTATCGAGGCTGAAGACACCACTGGCAGCAAGGAATACACTGCAGAGGAGCAGTACGGGCAGAGTCCTTATCACCAGACCAATGCATATCACCTTCATGCACCATATAGTCCTTCTGAAGGACAGAGGGAAGATCTGAGCCATGGAGACCAGCACAATCGTAGAGACCACTTTCAGAAATTCCAACCGGAAGGGTCAGCTGATACAGCAGCAGATGGGTACGAGGTCCGGTATAAGCCCTACCCACCCCCAGCACAGCCCGGCACATTCAGCGCTGACGTCCGCAGCATAGATGGCCAGTACGACCCGCTGCAGAGGGAGCTCCTCGATTCTGGGGATGaTGAAAAAGAGGGGTTGACACTAAGTCTGCAAGAATCTGGAAAAATTATTAAAGACTTGAAAGAGAAGGAGATGCAGCTGGAAGGGAAGATTAAAGCCTTGGAGATACAAGTTCAGGCCTTGATTGCCAACAATGAGGAGaatGTAAAGAAGCAGAAAATTGCAGATGCCGCCGTGGACAGCATGAAGCAGCAGATGGCAGAGCTGTGTCGCTCGGACACGCTGACCAGAGCCAGGGAAGAACACGGCCGAGTCCTCGCAGCTGTCAATGAGAAGCATGAAGAGAGAGTGCTGGCCTTTCAGCAGAAACTCGATGCTCAGAGTCACGCACTGGAAGAGCAGGTTAGACTAGATGCAATCCATTGCACAGTGCAGGAGATGAACCAGCTGCGAATTCTGTTACAGCAAGCACTGTCAGCGAAGAACATCGGTGACAGCATGATCAAATCACTGCAGGAAGAGCTCAGCGACATGAAGGAACAGATTACTCTTTTTGAATCAGCAGCAACATTCGGTGTTCTGGCCATGGATCCCAGTGGAGAGTTGGAGAACCAGATGACTGATTCTTATGTGGAACTGGGAATTAAGAAAATTAACTGGAAAAATAGTACATTTCACAGTACCTTCTTGGCTGGTGGAAGAGACAAGAATATGTCGAAAGAAGATCTAATTATCGAATTGAAAACGGAGCTTGGGCGTTTTCTGAGCAGTTTAAAGGTGAAGAGAAAAAAGATTTCCCAGTTGCAGGATGAGCTGAAGCAATCTCACACCCAAGTGCAAGAGCTGAAAAGCCAGCTGGAGAAAGCAGACAAAGATGTGAGAGATTCGATGGTCAGAGAAAACAGCTTGGAGAAGCATTTGGGAAGCTTGGGTGTGGCGGCAGCTGGACAGGTGGAGCTGGAAAGGCTTCAAAAGGAAAGCCAATACCTGCAAGAGCAATTGGAGAACACAGAGCTGAAATGTAGTGAAGAAAAGATGAAATCTGCCAATCTGGAATTATGCACCGAAATGCGAAACATGATACAGGTTTATGATCAGGAAAAGCAAGAGTTGGTTGAgagGTACGAAAGAACACATCAGCAGCATCGGGATGATATTGTGAGTCATTTGCGTGCAGAGTTATCACAGGACCATGCAACAGAAATGGAGAACCTGACAAAGATGTATGAAGACAAGATCCAGGTCTTAGAgaCACAAATAGCAGACCTTAATAAAGAGATGGTTGGGGTACAAGAATGCTACGTCACTGTTTGTAAGGAAAAGGATACAGTGGCAGAAGATATAAGATGCAAAATAGAAAAAGAGATGCACTCGAAAGAGGAGGAGTTAAAGAAGCAATTGACTGAGGACAAAGAACAGGCCTTAGAGAAGCTGAAGGTCAGTTTGGAGGATCAGCATCGGGTGGCATTGGCAACTGCAAGAGCCATGTGGGTTAGAGAGAAGGAAACCGATGTCAAGCAGCAGGTCGACACACAAGTTTCGCTGGCTAGGATGGCCTGGCAGGAGGAGCAGCACAAGGTGATAGATGAAGCTGTTCAGAAGGTTGAAAAGGAATGGGCCCAGAGGCTTGAGAAGGCCGTGAAGCAGATGAAGCTGAAGATATCAACACATGAACGGCACTGTCAGACTGAATCACCTGCCCCGCAGGGGGATCTAGGAAAGGAGTTGGAGTCTCAGCTGGCGgcacagaaactgaaaatgcaacaaGAGGCGGCAGAATGTCAAGTTAGGGCTGTAGAAGAGGCCATTAAAAAGACCCGAAAAGACCTGGAAAATAAACGCGTGGAAGACATTGCTAAAGAGGTGGAAAGTGCAGTGTCCAGTGCATACAGCCGCTGGCTGCTTGAGCTCAATGCTCTTCCAGAGTACAAAGCCAGTCTTcaagctgagagagagaagtgggaGAGAGAACATGAGCAAGATGTTGCCAAGCAGATATCCACTGTGCTCAAAGCAGCTGAGGAAAGATGGAAGAAAAGTCACCAGAAGGAGCTGGAAAAACTGGAAGCAGGCTCCAGGAACACAGATCTACAGGAGAAAGTTGTGTCCCTCCAGCGACAGCTAGAGCACAgagaagaagcagaagcagcGCTCGTCAAAGCAGAGCTGGCCAGGGCTCGCGCCGCCTGGAACAAAGATAAGCAAGAGGAAATGAACCACATTCAGCAGCTCAATGCAGAGGACTATCGCTCCTTTTTGGAGGagcacagaaataaattaaatgaagttGTGCAATTGGCCAAGGAGGGCTTTGAAAGGCAGAAGACAGAACTGCTCCTGCAGAAGGAGGCTGAGTTCCATCAGCTTCtgcaggagaaggaggaggagtggCACGCCAGCCAGGAGCAGAGGCTCCAGGCTGAGAAACAGCTGTATGAAGAGAGGGTTGTGGCTGAAATACAGGTTTTACTGGAAGAGATCCAGCAGCTGCTGCTCAAAGATCCAAACAAACAGCCCCTCAGACTGGAGAACCAGTGCAATAGTCCAAAGCAAACCCGCAGGCAGTGTATAGGCAAATTAAAAGCCTGTCTGCAGGCAGCGTGCAGAGACCTTGTTTCCAGAGCAATCAATGAAGCCAAGGAAGAATGGAAAAAAAGCAGTGACGTGAAGCTTTGTGCTTCGAAAGAAGAGGAGGACCGTCATGAGCAAGACATTAAACAGCTGAGAAGTCAAAGCCATGATAAGAAGAATACTCCATCTTGCGGCAGGCATTGTGTGGAAAAGCTTGCCAAGTCGCAGAAACAGTGTCAGGACCTGCAGAGGCACCTGGAAAAGGCCTGTCGCCAACTGCAGCAGACTGTGAGAGAGAACAAGGCTAACGTGCAACGGCTCCGAGAAGAATATGAAGAAacattaacaaaagaaaaggacGAAACCATGAAGAGAattgaagaaattaaaagctCTGAAAGCAAAGCATCCGTTCAGTCCCATGGTGCCAGCAGTCTTGAAGATAGAGGCCAGCTGTGTGTTCAAGCTGGCTTGGAGGAGATGAGGGAGCAGTACATGAACGCTGTAGCAAAAATTAGAGgaGATATGCTGCGTTACATCCAGGAGAGCAAAGCGAGAGCTGCAGAAATGATCCGAGTGGAGGTGCTGAGGGAGCGACAAGACACCGCTAGAAAGATGCGCAAGTATTATCTGACTTGTTTGCAAGAGCTTTTGGAAGATGGTGGAAAGAGAGAAGGGGCcgaaaagaaaatcataaatgCTGCGAGCAAACTGGCTGCAATGGCAAAAGTGTTAGAGACTCCTGTACCCAAGAGAAAATTCAGCAAAACCAGTGCAGCTCCAGGCAAGTCCCCATCACGCTTTCATTATTTCCTCCTCCAGCTTTTCCTTTGGAACCAGGAAGTGCTGGAGGAACAGTGGCGGGACCACACGATTGCTTGTAATAGTTTAAGGACATCAGAGGACAAAACTCATGAAGATGTATCTAATGTGCCAAAGAATGAACTTCCTAAAGGCACTCAACACTCTGGGGAAGTTCTAGGTCAGGATGTTCCAGCTGTCCTCACCCAGCTGTGgaatgggaaaagaaaaaagcacagtGGCTCGATCCCACAGCACAGCTCTGTGGTGGGGGAGGCAGCCCGTAACCCTGTCCTGAATCCTGCACTCCCCCCATCGGACTCCTGCTTTGGCCGGGTCAGCCCGTTCACCCTTGGGAACACTTTCTGTGACACTGCGCCAGGAAATGTCACGATCAGGAAGCAAAGCAGGGAACTGTATTTAAAAGGGCGAGGCCAAGCAGAGGAATGTTTCACAACTGAATCGATGAGCATACCTTTTCTCATTCAAGAGACCCCAGTTAGAGATGAAGGAGGGCCGAGTGATTGGAGTTCTGCCAGCTTAGGTGCACACTCGCAGGGCCAGAATCACCTGGCTTTGTATCCTGGCAGTAAAGCAGATTCCACTGTGAATTTTCCTTTCCAAGCGCTTTCCGTAGTTTCTTCACTCTCCGATACAAGTGATGATTATATGTATGATTTCAGGAGGAAGGCCGAAGTGGAAAGTGGTGTTGCCACTTCTAAGGAAGGTCCAGGTGTATTTTCCAAGCCCAAGACAAATTCTGGTTCTGCTGGGCTCCATGTGGAGAGGGATCAAACCCGAGAGCATGTTCCCGGTTCTGAAGGTGAAAGGCGCCACAGGTTTTGTTCAAAGAATTTATTCTCTGAGGTCAAGGCGCCTCAGCAGGACAGTGGATTTGATAGTCCTCTGTATGCTTTTcaaaagtaa

Function

GO: NA

KEGG:

id description
K16728 CEP152, ASL; centrosomal protein CEP152

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30725 lncRNA downstream 91306 21806120 ~ 21807061 (-) True G24503
TU30689 lncRNA downstream 140198 21757887 ~ 21758169 (-) True G24470
TU30688 lncRNA downstream 142421 21755591 ~ 21755946 (-) True G24469
TU30680 lncRNA downstream 180328 21711522 ~ 21718039 (-) True G24464
TU30623 lncRNA downstream 523335 21296378 ~ 21375032 (-) True G24430
TU30743 lncRNA upstream 24174 21942952 ~ 21943671 (-) True G24515
TU30786 lncRNA upstream 86956 22005734 ~ 22009433 (-) True G24551
TU30830 lncRNA upstream 212611 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA upstream 212611 22131389 ~ 22133981 (-) False G24579
TU30913 lncRNA upstream 342069 22260847 ~ 22262493 (-) True G24640
AMCG00007545 mRNA downstream 18064 21811480 ~ 21880303 (-) True AMCG00007545
AMCG00007535 mRNA downstream 128944 21760668 ~ 21769423 (-) True AMCG00007535
AMCG00007530 mRNA downstream 444950 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007529 mRNA downstream 495827 21397686 ~ 21402540 (-) True AMCG00007529
AMCG00007527 mRNA downstream 541366 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007540 mRNA upstream 7171 21925949 ~ 21942925 (-) True AMCG00007540
AMCG00007539 mRNA upstream 33907 21952685 ~ 21973858 (-) True AMCG00007539
AMCG00007541 mRNA upstream 57515 21976293 ~ 21981921 (-) True AMCG00007541
AMCG00007542 mRNA upstream 123677 22042455 ~ 22048365 (-) True AMCG00007542
AMCG00007543 mRNA upstream 130975 22049753 ~ 22068693 (-) True AMCG00007543
TU30382 other downstream 1425663 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1566556 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1975214 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3120729 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3839418 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2052893 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2347046 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3345554 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3712017 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12950657 34869435 ~ 34869807 (-) True G26961

Expression Profile