RNA id: AMCG00007545


Basic Information

Item Value
RNA id AMCG00007545
length 9084
RNA type mRNA
GC content 0.48
exon number 62
gene id AMCG00007545
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21811480 ~ 21880303 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCCGGGCAGGCTGCTCCAGCTGGCCGTGGGCTGCGCGGCGCTGCTGGGGCTGTGCGTCGGCGCGGCGCGGGACGGCGAGGACGAGGCGCCGGGGGAGCCGCGGGCGAGCCGCGCGAAGCGGCGTGGAGCCGCGCAGGACGCGCTGAAGGGACCCAATGTTTGTGGATCACGTTTCAATGCATACTGCTGCCCTGGATGGAAAACCCTTTCTGGAGGAAACCAGTGCATTGTCCCAATCTGCAGAAGCTCATGTGGAGATGGATTTTGCTCCAGACCCAATTTGTGCACGTGCCCAAATGGCCAGACTGCAAGTTCCTGTGGCTCAAAATCAGTTCAACACTGCAACATCAGATGCATGAATGGCGGATCCTGTGCCGAAGATCAGTGTAACTGTCAGAAGGGCTACTCGGGGGCTCACTGCGGGCAGCCGGTCTGTGAGAATGGGTGCCTGAATGGAGGGAGGTGCGTGGCTCCAAATCGCTGTGCCTGCACTTACGGGTTCACTGGCACTCAGTGTGAAAGAGATTACAGGACTGGGCCATGTTACTCTTCTGTGAGCAACCAGATGTGCCAGGGGCAGCTGACTGGCATAGTGTGCACCAAGACCCTGTGCTGTGCGACTGTTGGCAGAGCATGGGGGCACCCCTGTGAGATGTGTCCTGCGCAGCCCCATCCCTGCCGCCGGGGATTCATTCCAAACATCCGAACGGGAGCTTGTCAAGatgTGGATGAATGCCAGGCTATTCCTGGACTCTGTCAGGGGGGAAATTGCATTAACACTGTTGGATCCTTTGAATGCAAGTGCCCTGCTGGACACAGGTTCAACGAAGTATCGCAGAAATGTGAAGACATCGATGAGTGTATTACTATCCCCGGCATTTGCAATGGAGGAGAATGTTCGAACACAATCGGAAGCTATTTCTGCAAGTGTCCTCAGGGATATTACACTCCTATTGACGGCTCCAGATGCATAGATGGCCGAGCTGGATACTGCTTCTCAAGTTTGGTGAACGGCCGCTGTGCCAACCAAATCTCCCAGCTCCTAACCAAAGTGCAGTGCTGCTGTGACAGTGGACGCTGTTGGTCTGATGGATCTTCTCCAGAAATGTGCCCTATGCGTGGAACTGCTATTCTTCCACAAACATACATCACAGATATGTGTCAGCGGTATCTGAATCTGTGCATCAACGGTCGCTGTATTGCTGTTCCTGGAAGCTATCGCTGCGAGTGCAACATGGGGTTTAAACTGGATGTCCGGGGAGAATGCATTGatgATGATGAATGTGAACGAAACCCCTGCATCCATGGTGATTGTGTCAACACTCAGGGATCATATTTCTGTCAGTGTCCAGCTGGCTTTCAGAGCACTGCCACAAGAACCGAGTGCCGAGATCTCGATGAGTGTGTGGCAAATGGACGGATTTGCAACAATGGACGCTGTGTCAACACTGAAGGCAGCTTCCACTGTGTCTGCAATGCTGGCTTTGAGGTTTCGCCTGATGGGAGAAATTGTCAAGATCAAGATGAATGCTTGATCAGAAATATGTGCCTTAATGGGATGTGCATAAATGAAGATGGgagttttaaatgcatctgcaaACCTGGGTTCCTGTTGGATCCTACCGGACGCTTCTGCGTAGACATCGATGAGTGTGAGACTTCGGGGATGTGCATGAATGGGCACTGCGTGAACACTGAGGGCTCCTTCCGTTGTGACTGCCTGCCCGGATTGGCTGTGGGGCTGGATGGGCGTGTCTGTGTTGACACACATATGCGTAGCACATGTTACGGAGGGTACAAAAGAGGACAGTGTATAAAACCTTTCTTTGGAGCCCTTACCAAGTCAGAGTGTTGCTGTGCCAATATTGAGTATGCTTTCGGAGAACCCTGTCAGCCCTGCCCACCATTGAATTCAGctgAATTCTCTGCTCTTTGCAGTAAAGGTGTGGGCACTACTTCTGATGGAAGAGATATAAATGAATGTGCATTGGATCCAGATATCTGTCAAAATGGAATTTGTGAGAACTTGCTTAGAACCTATAAGTGCAACTGCAACGAAGGCTTTGAAGTGGACATCACTGGCAAAAACTGTTATGACATTGATGAATGTGCCATTAACAGACGCCTATGTGAGAATGGGGAGTGCAGAAACACACCTGGGAGTTTCACCTGCAGCTGTCCGAAGGGATACGTGTTTCTGCCCGAAACCGATGTCTGTAACGATATCGACGAGTGTTTGTCCAGCCCCTGTGTTAATGGAGACTGTAAGAACAGCCCCGGGTCCTTTTTGTGCGTGTGTCCTACAGGCAGCACTCTGGACACCTCAGGGACTCTGTGTGTTGAAACGGGGAAAGGAACATGCTGGCTGAAGGCAATTAATGGCCAATGTGAAATAAACATCAACGGGGCAACACTCAAGTCTCACTGCTGTGCAACAATGGGAGCAGCTTGGGGCAGCCCTTGTACCAAATGTGAACCAGATCCTATTTGTTCTAAAGGCTATGCCAGGGTTAGAGGGACAATTTGTGAAGATGTGAATGAGTGTGAAGTGTTTCCTGGCGTTTGCATCAACGGAAAGTGTGTAAATACAGTGGGATCTTTTATTTGCCAGTGCCCCACTGGGATGACTGTGGATGCCACTGGTAGAACATGCATTGATCTGCGTATGGAATCGTGCTATCTGACCCACGAGGATGAGAGGTGCACCGCTCCCATACCTGGGAAACACCGCGTGGACGCCTGCTGCTGCTCCGTTGGCGCTGCCTGGGGCCCGGAGTGTGATGAATGCCCTGAGAAAGGCAGCTCTGAATTCAGCCAACTTTGTCCTCGAGGCCCGGGCTTCTCCCACAGGGGGGACTTTATCAATGGGAGGCCTTTTTTGAAAGacATCAACGAGTGCAAAATGATCCACAGTCTGTGCGCCAATGGTAAATGCAGAAACACTATTGGCAGTTTCAGATGCAAGTGTGATAGTGGTTTTGCACTTGACTCAGAGGAAAGGAATTGCACTGATATTGATGAGTGCCGGATATCTCTGGATATCTGTGGTCAGGGAACCTGTGTCAACACACCGGGAGACTTTGAGTGTGAATGCTTTGAAGGCTATGAGAGTGGCTTTATGATGATGAAAAACTGCATGGacaTCGACGAGTGCGAGAGGAATCCATTGCTGTGCCGCGGTGGTGATTGTGTCAACACAGAGGGCAGTTTCCGCTGCCTTTGCCCCCAGGGCCACGAGGTCGCGACTGATGGCTCTGCTTGTTTAGATATTAACGAGTGCGAATTGAGCGATAAGCTGTGCAAGAACGGCCGATGCGTGAACCTGATTGGTCGGTATCAATGCTCCTGTAACACGGGTTATAAATCCACGGAGGACAGGCTATCATGCGTTGACATTGATGAATGTACCATTGAGAACGGAGAGTGCGAAAATTTCTGTACAAACTCTGAAGGCAGTTATGAATGCAGCTGTAAGACTGGCTTTGCCCTGATGCCGGATCAAAGAAGCTGTACAGATGTTGATGAGTGTGAACTCAATCCAAATATCTGCCTGAGTGGGAACTGTGAGAACACAAAGGGCTCTTTCATCTGCCACTGTGACCTTGGCTATTCGGTGAGGAAGGGAAGCACTGGTTGCACAGATATAAACGAATGTGAGATTGGGGCTCATAACTGTGACAGGCATGCTACCTGTACCAACACTGCTGGTAGCTTTAAGTGTAGCTGTGGTCCGGGATGGATTGGTAATGGGGTCAAATGTACAGATTTGGATGAATGCTCTAATGGCACTCACATGTGCAGCAACAATGCCGAGTGCAGGAACACGATGGGCTCCTACCGCTGCCTCTGCAAGAAGGGCTTCACTGGAGACGGTTTCTTCTGTACAGACAGCGACGAATGTGCCGAGAATGTAAACCTGTGTGAGAATGGACACTGCCTGAATGTTCCCGGGGGATATCGGTGCGAGTGTGACATGGGCTTCATACCCACCGTGGATGGAAAGGCCTGTGAAGATATCGATGAGTGTTCATTCCCCGATATATGTGTCCACGGGAGGTGCCGAAATATTCCTGGCCTCTTCAGGTGTGAATGCCATACCGGATATGAACTTGACCGCAGTGGAGGCAACTGCACAGATATCAACGAGTGCGCTGATCCAACGACTTGCATCAGTGGAATTTGTGTTAACACTCCTGGCAGCCACATCTGCAACTGTCCTCCAGACTTCGAGCTCAACCCAACCCGAGTTGGCTGCGTCGATACACGCTCCGGTAACTGCTACCTGGATGTGCGTTCCCGTGGTGATGCGTCAGAGAGCCTGGACTGCTCCAGTGAGATCGGAGTGGGCGTGTCCAAagcctcctgctgctgctccctgGGACGAGCCTGGGGCAACCCCTGTGAAGCCTGCCCCCCGGTCAACTCCTCTGATTATAAGACTCTGTGTCCCGGCGGAGAAGGCTTTCGACCTAATCCCATCACAGTTATTCTGGAAGATATCAATGAATGTCAGGAACTACCAGGACTTTGCCAAGGAGGAAATTGTATTAACACATTTGGGAGCTTCCAGTGTGAATGTCCGAAGGGTTTTGAACTAAATGAAGACACAAGGGTCTGTGAGGatgtGAATGAATGTGAGAGACCTGGAATCTGTGGTCCTGGACAGTGTTATAACACTATAGGAAATTATACTTGCATTTGCCCTCCAGACTACATGCAGGTGAACGGTGGAAACAACTGCATGGATATGAGGAGGAGTCTGTGCTACAGGAATTATTACTCTGATAATGGCTCTTGTGATGGGGAGCTGCCTTTCAACATGACAAAGAAGATGTGTTGCTGCTCGTACAATATTGGAAGGGCCTGGAACAAACCATGTGAACAGTGTCCCATACCAAGCACCAACGAGTTTGCCATCCTGTGTGGCAGTGAGAGACCAGGATACATCATTGATATTTACACTGGACAGCCTATTGACATTGATGAGTGTAGAGATATCCCAGGTTTGTGCGAGAACGaCATCGATGAATGCCAGAATGGACCAGTTTGTCAACAAAACGCTGACTGTGTGAACCTGCCAGGGGGTTATCGCTGTGAATGCAGACCAGGCTACCGGTCCACTCCTACAGGGCAGTGTCTCGATCGCAATGAATGTTTTGAAAATCCCACTATATGTAGCCATGGGCAGTGTATTGACACAGTTGGAAGCTATCACTGCATCtgccacaatggatttaaagcAACTCCAGATTCATCCATGTGCATTGATGTTGATGAGTGTGAAAGACAACCATGTGGAAATGGAACCTGTAAAAACACGGTTGGCTCTTACAACTGTCTGTGTTACCCTGGCTTCCAGCTGTCTCACAATGATGACTGCATAGATACGGATGAGTGCTCCACTCAGAGGGGTCTCTGCAGGAATGGCGACTGTTTCAATACTGTAGGATCCTTCCGATGTGTGTGTCGTGATGGCTATGAGCTCACTCCTGATAACAGGATTTGCATTGATATCAATGAGTGCGCTGTGAACCCTGGAAGATGTGGCCCTGGCACCTGTCAGAATTTAGATGGCAGCTACAGGTGTATCTGCCCCTCTGGTTACTACTTAAAAGATGAGACATGTGAAGATATTGATGAATGTGCACAGAGCCCAGATATCTGTACTTTTGGCACCTGTTCCAATACTGTGGGGAGTTTCAAGTGCCTGTGTCCTGAAGGTTTTGAGCTCTCTTCTTCTGGGAGACGGTGTCTTGATGTTCGAAAAAGCTACTGCTTTTCCAAGTTTGAGAATAGGAGGTGCGTTGCTCCCCTGCCTGAAAACACAACCAAGGGAATCTGTTGCTGCAGTGCCATGCCAGGCCAGGGCTGGGGTGACCCCTGTGAGATCTGTCCCACAAAGGACCAGAATATCGATGAGTGCGCCACGAGTCCAGACATCTGTAAGAATGGGCAGTGCATTAACACAGATGGCTCATTCCGATGTGAATGTCCTTTTGGTTTTCGAGTGGATTATTCTGGTATAAACTGTGCAGATATCAATGAGTGTGAACTGGGCAATCCTTGTGGTAATGGGACATGTACAAATGTTATTGGAGCTTTTGAATGTACATGTGATGACGGCTTTGAGCCAGGACCCATGATGACCTGTGAAGATGTGAACGAATGTTCTCAGAACCCCCTGCTGTGTGCCTTCCGCTGCGTCAACACGGTCGGATCCTACGAGTGTAAATGCCCCAGCGGGTATGTCCTCAGAGAAGACCGGAGAATGTGCAGAGaCCAAAACGAGTGTGAAGACGGTATTGATGACTGTGAAACAAGAGGGATGTTGTGCAAGAATCTGATCGGCACCTACATGTGTATCTGCCCTCCAGGTTATGTGCGTCAACCTAATGGAGAAGGTTGCATGGATTTGAATGAATGTTCTGCTAAACCAGGCATCTGTGAGAACGGTCGTTGTGTGAACGTAGTGGGCAGCTACGAATGTGCTTGTCATGAAGGATTTACAGTGAGCTCCAGGAAGACTGATTGCATTGACAACCGTCAGGGCTTCTGCTTCACGGAGGTGCTGCAGAGCCTGTGCCAGATGACGTCCAGCAGCCGGAACCTGGTGACCAAGTCTGAGTGCTGCTGCGATGGGGGCCGGGGCTGGGGGTCCAGCTGCGAGATCTGTCCCCTGCCTGGAACCACTCAGTACAAGAAAATGTGTCCCCTTGGTCCTGGATACACCACTGATGGGAGAGACATCGATGAATGCCACGTGATTGGGGGTCTGTGTCGAAACGGGCAGTGTGTGAACAATATTGGTTCCTATGGCTGTATTTGCAAACCTGGATATACCACTGATATCACTGGGACAACATGTGTGGATATTGATGAATGCGTTCAGTCACCAAAACCATGCAATTTCATCTGTAAAAACAGTGAAGGAGGGTACCTATGTTCCTGTCCAAGGGGCTACATTCTACAGGAAGATGGCAAGAGTTGTAAAgACCTTGACGAGTGCTCCACTAAACAGCACAACTGCCAGTTTCTGTGCGTCAACACCATCGGTGGGTTCACCTGCAAGTGTCCCCCTGGCTTCACCCAGCACCACATGGCCTGCATTGATAAGAACGAATGTGCCACAGACCCAGGGCTGTGTGGAGCTAAAGGAGTTTGTCAGAATACTCCAGGGAGCTTCAGCTGTGAGTGTCAGCGTGGATACTTACTGGACCAGAGTGCACAAAACTGTGAAGACGTCAATGAGTGTGATGGGAGCCACCGATGCCAGTACGGCTGTCAGAACCTGGTTGGAGGATACAGGTGCAGCTGCCCACAAGGTTACCTTCAGCACTACCAGTGGAATCAGTGTGTGGATGAAAACGAATGCATGAACAGTCAGATTTGTGGCGGGGCTTCATGCCACAACACACTCGGGAGCTTCCGATGCCTCTGTCCTACAGGGTTTCAGTACGAGCAGTTCAGCGGAGGCTGCCAGGACATCAACGAGTGCACTTCCTCTCAAAACCCCTGTAACTATGGCTGCTCCAACACTGATGGTGGCTACACCTGCGGATGCCCTGCTGGTTACTACAGAGCAGGACAAGGGCACTGTGTATCTGGGGTTGGATTTGGACATGGAGGCCAGGGGCTGGCTGTAGGCGGAGACACCGATGACAACACTCTCTCGCCCGAGGCCTGTTATGAATGTAAAATCAATGGTTATCCAAAGAAGGGCAGGAGACGCAGAAGCACAAATGGAACTGAAGATGAAGTCCTCACTGACTCACAGAATGAACAAGAGTCCATCAGCCTGGCCAGTGTGGATATTGAGGACACTCTCATATTCAGCTTCAACATCACTGACCTGAACAGCAAAGATCACATCCTGGATTTCATTCCGGCTCTCAACACTCTGAACAACCACATTCGCTACATGATCGACTTTGGCAACGATGAAGGTTTCTTCAAAATCAACCAGAAGGAAGGAATAAGTTTTCTCCATCtaaccaaaaagaaaatggttCCTGGAACCTATTCTTTACAAATCAGCAGTATCCCACTGTACAAAAAGAAGGAACTGGCTCATCTGCAAGACAAGTATGACAAAGACTACCTCACAGGGGAGCTGGGAGACACGTTGAAAATGAAAGTGCAAATTGTTCTTCATTAACTGCACGTGAAGGCAATGCCATCGCTTATGCCAAAGAAAAAGGATGGACTGCATTGTTGATTCCCAGGCAGATTCTACATATCATGGATACAGtatcttattattttacagtatgcaAAAGTACTGCTACATgtccagaaaacaaaagaaaaaacacaggatgCAAATCCTTAGCAAAATCAACCACTTTCTCAggctttttataaataaagctaATCTTGTGTAATAAGGTTTTGTATAATGATATGTTGAATCTTGATACACTAACTGGGACATTTGAGTTGCTAGAAGGCACTGCTGCTGAGACTTTTCATCATTCAGCAGAAGTTGAAGATTTTGCTCTGTCTTGAAGGACTTTTTATTGTAACTTTTGCTTCTCCATTTTTTTCAACTGAATAGATCAGCAGTTTATTATATTAACTGGTGCTAGTTACATGACATCCTAGATTTATGAATGCActgtaatattttacaaacttGGTAGCCATAAATGCAATTTCTACTCAGTCTAAAGATTTCCATTACTTTGCAACCAACCAAAGTTAGCTCAATAGCTTTTTCTCAGTTATATCTATACTACATGTAAATtaagtgtgtgtatactgtaatCATGCTACTTTTTTAATCATGGAAGCATTTGTAAACTAGATTTATAAGCCCTGTATGGAAGGGTTTTATAATGGTGCTTATAAAGACCAACTacttctttttaattgtatacacCATTCTGATGATGCAATATCTGTGACTTAATAATTATGCACTGAGGCCAGCAGAGCCACTCATGTTCTCCACAGTCATATGACAATCAGTGCTGTCACCCAAAGTGACATTAATGAAAACATCTTCAGTACCAGTGTCTGTTCACATCAATGAGGGTTTAGTTTCAGtaaattcacaataaaaacatatttttggttTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30725 lncRNA downstream 4419 21806120 ~ 21807061 (-) True G24503
TU30689 lncRNA downstream 53311 21757887 ~ 21758169 (-) True G24470
TU30688 lncRNA downstream 55534 21755591 ~ 21755946 (-) True G24469
TU30680 lncRNA downstream 93441 21711522 ~ 21718039 (-) True G24464
TU30623 lncRNA downstream 436448 21296378 ~ 21375032 (-) True G24430
TU30743 lncRNA upstream 62649 21942952 ~ 21943671 (-) True G24515
TU30786 lncRNA upstream 125431 22005734 ~ 22009433 (-) True G24551
TU30830 lncRNA upstream 251086 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA upstream 251086 22131389 ~ 22133981 (-) False G24579
TU30913 lncRNA upstream 380544 22260847 ~ 22262493 (-) True G24640
AMCG00007535 mRNA downstream 42057 21760668 ~ 21769423 (-) True AMCG00007535
AMCG00007530 mRNA downstream 358063 21424933 ~ 21453417 (-) True AMCG00007530
AMCG00007529 mRNA downstream 408940 21397686 ~ 21402540 (-) True AMCG00007529
AMCG00007527 mRNA downstream 454479 21354520 ~ 21357001 (-) True AMCG00007527
AMCG00007526 mRNA downstream 476090 21322232 ~ 21335390 (-) True AMCG00007526
AMCG00007544 mRNA upstream 18064 21898367 ~ 21918778 (-) True AMCG00007544
AMCG00007540 mRNA upstream 45646 21925949 ~ 21942925 (-) True AMCG00007540
AMCG00007539 mRNA upstream 72382 21952685 ~ 21973858 (-) True AMCG00007539
AMCG00007541 mRNA upstream 95990 21976293 ~ 21981921 (-) True AMCG00007541
AMCG00007542 mRNA upstream 162152 22042455 ~ 22048365 (-) True AMCG00007542
TU30382 other downstream 1338776 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1479669 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 1888327 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3033842 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 3752531 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 2091368 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 2385521 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 3384029 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3750492 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12989132 34869435 ~ 34869807 (-) True G26961

Expression Profile