RNA id: AMCG00007548


Basic Information

Item Value
RNA id AMCG00007548
length 3156
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00007548
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22123647 ~ 22129477 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttaaacacacatttaatcgTATCATAATAcgtatcatatatatttatattgaatacgtattttttaatttaagagtttacttacatttctaattaataaACCAAGAGAAAGCTTACGATCGGCTAAATTCTTAGAGGTGTGGAACAGCGTGGTAATGTTTGTTTGGGTCAGAGATAGTGCTTGGATGACATGTGGAATTAGTGGTTTGACTAAAACGTTGTAGTTTGTAAAGCTATGGAAGAAAAGTGTTTGAAGGTGCTGCCCGTGGATCCTCGTGACTGGGGCACACAGAGATGCAGACTGGGTCCTGCTTTAATGACATCTCTGGGACTGAAGATCGGGACCCCAGTGCACATCTCAGCCCTGGGCGGTGATTGTGTTTGCACTGCTTGGCCAAGGACTGATCTTGCCGAGGGTTTCTTGCAGTTTGATACCAAGTGTGCAACAGCGAGTCTCATCACTAATACTTCCAGAAACTACACTGTAAGCCCCAGCCATATAAGGAAAATTGCCTCCCCCAAACTGAAATGCATTGGCGTAAATGTCATCGTCCGTAATGTGGAGTTTAAGAAACACTCGACTATGGCTCAAATTCACGAGCTTGTCAAAGACCTGCTGCGTAATGTGTATGTTTCCCAAAAATATATAGTCTCTTTTTCTTCACTGGATATGCctattgaattaattgaaattaatcgTGTGGAGGCATGTGGGAACAAGGCAGGTCTTATCACTGCTAAGACAGGCATAGACATCGGAGAAGTCAAAACCCTCAACAATTACAAAAGCCGGTTGCAGAATTCCCCAAAGATACCACTGGGAGGAATGGAGGCTGTCTGTGCTTCAATAAAGGAAATTCTAAATATGCCTCTTCATTACCCGGGAACATTACACAGACTGGGACTCTCTTGTCCCAGAGGTGTGCTTCTCATTGGGCCCCCCGGAGTAGGCAAGACTATGCTTGTAAGAAGTGTTGTGAGGGAGGTTGGCGCCTCTTTGGTTACCATCAATGGCCCAGTAATACTTGGCTCGAGGCCAGGGGAGAGTGAGGAGAATTTAAGGAAGATATTCCAGCAGGTGAAGGATGCTGCCGAGGAAGGGCCGTGCGTCCTGTTCATCGATGAGATTGACTCCCTCTGTCCAAGGCGAGCAGGTTCCACCAGCGCCCCTGACAACAGAGTGGTCGCCCAGCTCCTGACGCTGATGGATGGTATTGGCAGCGAAGGGCGTTTCGTCATCATAGGGGCGACAAACCAGCCAGACGTTCTAGATCCGGCCTTGAGGAGACCAGGTCGATTTGACAGAGAGGTTGTCATTGGCGTACCAACACTTCTACAGAGAAAGTTCATTTTAGACTTGCTGACTTCAAAGATGTTTCTGTGCAGCAGCGTGGATTTGATTTCTCTGGCTGAGAGGACGACAGGATATGTTGGTGCTGACCTTACTGCGCTCTGCAGGGAAGCTGCTTTGCAAGCCATTCTCCACAGCTCCCAGGGCTCTGGGAGCCAGGTGATCAGCATGGATAACTTTTTGGAAGCCCTGAAGAAGATCCAGCCCTCGTGTCTCAGAAGCAGCATCGGTCTGACTGATTTCAAACCCATCACCTGGGACCATATAGGGGGCCTAGAGGATGTCAAGTTAAAACTGAAACAGagtaTTGAGTGGCCTATGAAGTTTCCAGAGGCGTTCCTCAGGCTGGGCCTGCCACGTCCTAAAGGCGTGCTGCTGTACGGCCCCCCCGGCTGCGCCAAGACCACGCTGGTGAAGGCTGCCGCCAGCAGCTCCCACTGTTCCTTCCTGTCCGTCAGTGGCGCAGACCTCTTCTCACCGTTTGTTGGAGACTCTGAGAAGGCCCTGGCCCAGGTTTTTCGTCAGGCCAGGGCCTGTGCTCCTTCCATCCTATTCCTGGATGAAATCGACTCGATCCTGGGGTCCCGGGCGGACGGCATGGCCCCCCACAGTGTCCATTCCAGAGTGCTTTCTGTCATTCTGAACGAGCTGGACGGGGTGGGACTCAaagtgctggagaggagagggacaGGAAGCCAGCTCTGTCTGCAGGAGGGTTTCCCCGAGCAGCACCATGGAGATCGCCAGCTGGAGTATCAGGAGGTGTGTAACAAGGACGTGATGGTGGTAGCAGCGACCAACAGGCCAGATGTGTTGGATGACGCACTGATGCGACCAGGACGACTCGACAAGATGATCTATGTTCCGCCTCCTGACCAACAGGCCAGGCTTGCGATATTGGAGATCTGTGCAGAGAAAATGCCCCTGGAGGCGGATGTTTCTTTGGCTGAGCTGTCAGAGAAgactcatttattttctggagCCGATTTGGAAAATCTCTGTAAAGAGgcagCTCTGCTGACCCTGCAAGAAGAAAGTATGGAGGCTTCCAGCATTAAACGgatatattttctgaaagcaatgcaaaatgtaaaaccttCCCTACAACCCCAGCAACTACAGTTCTATCAGAATCTGTTTAAAAGGTGAAGGCATTTACACCAGACACATTAGCAAAGTTCAGCATTTCGAAGTGACCATTTCTTCAAGCGTCTTCCGTGGAAGTCAAGAATGTGGAGTAAATTGTCTGccgtgttttttttcttcaagaatAATGGACTAGGATTGCAATAACAGACAACAGAATCAGCTtgtgagttttattttaaggatCTGTAGTGTGAAACTCTTATacagtgttaaatgttttaatattttatcattaaaaaaataagtataagaTTTTGTCAACacctataaatattttgtatagatCTGAAATAAATGTCTATTGACTGATGCGTTTTGGTCATAAAATGTCAGAACTTGATTTGATTTGgacaatgtttttaatatactcACAGAAAACAACCTTGTAATATGAATGGGCAATGTCATTGTACCTACAGattacaatataaatgataataataatacatgcctTTATTGCAGTACAATTACAGTCCACAAGCTATTGAGTATGTccattgaaaaataacaaacccCCAaggtattatatatatagagagagagaacgagtaTAATTTGGTGACCCTGTGTGTGGCTTATATCACATAGATATGTTCCAATGTCACTGTGaatgtggaaaagaaaaggaaatatattaaaaataacattacattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30569 lncRNA upstream 725600 21386225 ~ 21398047 (+) True G24384
TU30470 lncRNA upstream 1242723 20880546 ~ 20880924 (+) True G24311
TU30469 lncRNA upstream 1246862 20876584 ~ 20876785 (+) True G24310
TU30397 lncRNA upstream 1629642 20492904 ~ 20494005 (+) True G24256
TU30401 lncRNA upstream 1631030 20492396 ~ 20492617 (+) True G24258
TU30809 lncRNA downstream 2558 22132035 ~ 22134704 (+) False AMCG00007547
TU30811 lncRNA downstream 15362 22144839 ~ 22147346 (+) True G24570
TU30812 lncRNA downstream 15362 22144839 ~ 22148238 (+) False G24570
TU30852 lncRNA downstream 59768 22189245 ~ 22203939 (+) False AMCG00007554
TU30854 lncRNA downstream 59768 22189245 ~ 22203939 (+) False AMCG00007554
AMCG00007537 mRNA upstream 71026 22050281 ~ 22052621 (+) True AMCG00007537
AMCG00007536 mRNA upstream 89739 22033242 ~ 22033908 (+) True AMCG00007536
AMCG00007538 mRNA upstream 116026 21984244 ~ 22007621 (+) True AMCG00007538
AMCG00007532 mRNA upstream 316590 21803173 ~ 21807057 (+) True AMCG00007532
AMCG00007534 mRNA upstream 322995 21781383 ~ 21800652 (+) True AMCG00007534
AMCG00007547 mRNA downstream 2096 22131573 ~ 22134714 (+) True AMCG00007547
AMCG00007546 mRNA downstream 24200 22153677 ~ 22158549 (+) True AMCG00007546
AMCG00007549 mRNA downstream 32727 22162204 ~ 22174755 (+) True AMCG00007549
AMCG00007554 mRNA downstream 61926 22191403 ~ 22203951 (+) False AMCG00007554
AMCG00007555 mRNA downstream 75299 22204776 ~ 22216240 (+) True AMCG00007555
TU30494 other upstream 1056864 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3067514 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3553183 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 3831309 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 3915339 18207078 ~ 18208308 (+) True G23698
TU30868 other downstream 152223 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 1059983 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 2062744 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5954345 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6323532 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile