RNA id: TU30862


Basic Information

Item Value
RNA id TU30862
length 1590
lncRNA type sense_over
GC content 0.38
exon number 4
gene id AMCG00007553
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22263520 ~ 22266409 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCAGATTGTGCTGTAGCGCTTCAAACCAAGTCCTCCCAGTTGTGATCGCACGACTACTGAGAAACGAGAAGAGCAGCCATGTCGGTAAAAGTATACATAGAATACTGTGGGGGATGAGGGTACGATTCCCGCTACCAGGACCTTGTGGTTCACATCAAGAAGCAGCTTCCTGATGCAGAGGTCTCTGGAGGTGTAGGGCGGAGGGGGAGTTTTGAGATTACCATCAATGATCTGCTGGTTTTCTCCAAGCTGGAATGTAAAGGCTTCCCAGTAACTGAAGAAGTGATCGAAGCTGCGAAGCAGGCCAGCCGTGGAGAGAAGATGCAGAAGGTGACAAAGAAGGAAGGCTGTGTGGTCATGTAGAGCCAAGGGTTTAAAAGGCAGAAATAACTCTAAAAATGTAAACGGGAGAGCTGGTTCTTTTAATGATTGTCTTCACTGAAACAAGAGGTGGACACATGATAAAACAAGAACGTGCTCTACAGATTTATATCTTAAGACTTATTTCTCTGTGTTTCCAgagattatatacatatttatatatacatcatgtCACTGATAATAATCTCAATAAAGCTACTGGACAGAGATGAAAGGCACTTGCAGTACTACTGTGTATAGTACTGCATAGGGAAGAGTGGAGGTATTGTTTTGTCATTGACGGCAGCAGGGTGACACCAACATGTAGTACTAGTGTTACGTTTCCACAGCCACATTTGCACAAAGCTGTAGTTTCACACCTGCCCAGTGTAGCAACAAAGTGGACACTGAGAACTGAGTCCACAGCCCTGTAGTGCCCTTCGGGTAATGTAGCTGCCCTGGCTGTCttgagatggggaggggggcagaaagaattaagaaaaataaaaggcttgTTGAAATGTGACTGTGGAATTGCAACCTTAGCTTTTTTCACCCTGTGATTTCAGGAGCTTATATTACCACAAAGTAAATTACTTGGCAGATTACAATATTTCAGATGAAAACAGactgaaataatgtaatctgCACAGTCACTTACTTAGTGGTATAAAAGTTAGATTTTGTTTAaagcatatatatgtatatgtatgtataacacatgcttttttgtttttattacaataagggaatatttttgtattgcttaatTAGAATCAAAATAATACTCTGTAGACCTAATGTGTAaagtaacaataatataaaaatgtcatgTGACTGcttgtcttgtttttgtcattGGATCTGCCCCATGGCAGTTGTTTCATGTACAATGGGCAGATCAGGAGTAATGCTGTTGCATACTATTTGTGTAATcttataatattttgaatatgtattaacattttgaatagtatacatatatattattttacatatacttatgtgtatttatatctgcattaaacaaatctgtctgTTAATGCTTTCTTGTAATGTTGAATTTAATTACTGAACAAAACTGCTGAAATAACTGGTAAAATCAAAATGAACGTTTTTATTGTTGCATcttttgaatttcaaattaatctaattttcAGGTGGAGTAAATTGCACTAAAtttaaaagcattgaaaatGGAATGAATGGTCTTTACCTCGGCTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30852 lncRNA upstream 59902 22189245 ~ 22203939 (+) False AMCG00007554
TU30854 lncRNA upstream 59902 22189245 ~ 22203939 (+) False AMCG00007554
TU30853 lncRNA upstream 59902 22191380 ~ 22203939 (+) True AMCG00007554
TU30812 lncRNA upstream 115603 22144839 ~ 22148238 (+) False G24570
TU30811 lncRNA upstream 116495 22144839 ~ 22147346 (+) True G24570
TU30934 lncRNA downstream 74327 22340736 ~ 22343616 (+) False G24654
TU30935 lncRNA downstream 74327 22340736 ~ 22342563 (+) True G24654
TU30982 lncRNA downstream 183698 22450107 ~ 22450404 (+) True G24692
TU30983 lncRNA downstream 187407 22453816 ~ 22454055 (+) True G24693
TU30985 lncRNA downstream 188857 22455266 ~ 22456761 (+) True G24695
AMCG00007557 mRNA upstream 1988 22232527 ~ 22261853 (+) True AMCG00007557
AMCG00007555 mRNA upstream 47601 22204776 ~ 22216240 (+) True AMCG00007555
AMCG00007554 mRNA upstream 59890 22191403 ~ 22203951 (+) False AMCG00007554
AMCG00007549 mRNA upstream 89086 22162204 ~ 22174755 (+) True AMCG00007549
AMCG00007546 mRNA upstream 105292 22153677 ~ 22158549 (+) True AMCG00007546
AMCG00007556 mRNA downstream 2105 22268514 ~ 22274179 (+) True AMCG00007556
AMCG00007560 mRNA downstream 29645 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007559 mRNA downstream 56315 22322724 ~ 22331465 (+) True AMCG00007559
AMCG00007561 mRNA downstream 87203 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007562 mRNA downstream 142519 22408928 ~ 22431845 (+) True AMCG00007562
TU30494 other upstream 1197058 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3207708 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3693377 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 3971503 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 4055533 18207078 ~ 18208308 (+) True G23698
TU30868 other downstream 15291 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 923051 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1925812 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5817413 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6186600 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile