RNA id: TU30853


Basic Information

Item Value
RNA id TU30853
length 1932
lncRNA type sense_over
GC content 0.38
exon number 5
gene id AMCG00007554
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22189245 ~ 22203951 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGTTCCTGTTCTATAGCCTGCTGATCTAAGTAGTAGACAGCCAGTGGATATCTTTGTCAAATTCCTTGTTGGATAAAAGTAAGCTGTGTTTTTGCTTTGGGATCAGATCTGCTCTGATGAATGTAAGGACAGATAGGCACGTGTGTTGAAGTGAACAACTTGTTTATGACATTTACACTTGCTTTTGGGTAGTCCCTGTGGGTGTATTTCATGTGTAGTTAGTAACGTGAAGCAGGAAGCAAGGAGGATCTCATCAGTACCGCGTAGCTtgtttgtgctttgtgctgAGTTTCATAGTCGCTAGTGTCTTGCCACACATTACAGCAGCATGAAAACTCGGGTGCATGGTCTGCAGGAAGCTGCCGTTCATTAGCCACCCGGTCGTGAAGCCTGCTGGATATTCCTCGGCATAACAAAACGGACATTTGAGAGGGAATATAGGATTTGTTCGTTTTtccccacattttttttttttttttttttcttcttcctggtCCTTTGCTCATAATAAGCTTCCATCATATGCTCGTGGCAACATCACTGGTGAGCCTTACAGGAAGACAACTGAATATTTTCCACAGTGAGGAAGTTTTTGCTCTATCAGAGGCAGCATATTCAGCATGACTGAGTTCTGGGTCTGTTTCAGCTGCTGCATTGCAGAACAACCACAGCCAAAGCGGCGAAGGCGAATAGACCGTTCTATGATCGGAGAGCCGATGAACTTTGTACACACCACACATGTGGGATCGGGGGACATGAATATAGGACTTGGAGCAgtGGATTCGATTCAGgatcaaatgaaatcaaaaggTGGCTATGGCAATGGAATGTCAGATAGTGTTCAAGAATAATTTTTGTATGATTCTGCAGGTATTCACAATGCATCACCAAGTCGTTAGTGTTCCTGGACAGCTCATCAACACAGCACCTCACCTCCCAATGAAGAGGCGTCTTATCCTTTACACTGGGTTTCCTTGGTGCTcttcaaataaagcaaatgtgtgaaataaaccTAAGACCGATGTACCTTATGTGGTTATTGGATAATTGTGATCTAAAtgagtgcatttaaaatacaagcaCTGCTTTTATAGAAACACCGAAGTTAACAAATGTTGTATCATGTGTAACACTGTACATTATGAATGCATTGCTcgctagaaaaataaattgaatgaaGCCATTGCAGAAGGACCTGGATGCCTGCTGATGAGTATGTTGTGGTATGTGTGATGAATACAGGATCAAACACAGTATCAGCTGTTCTATAGTAAAGGTTTTAAgctctatttatttacttgattaCAGTTTTTGTCATATTGTGGCTGGGCCACTCTCCAGATATGATGCAAAGCTTAAAGcatatttttatgcattttacagtttttaaaacctTAAGTTATTTGTCTGTTCAAAATGAGACTTTTGCTACACATTAGAAGTTctgtttgtactgttttgttCTAGGATGCTCAGGGTTTCTAGTctctgaagctttttttttgtcacttgAAATTAGTAGAGCGCACTGTAATATCTGTATTAATGCACAAGTTTAGCCACTGTACATTTTGATTGAATTTCTGTACACCCCCCCATCTTTTTCATTGTTTAccttcataataattaaaaaaaaaatacatggataAGTGCTtttagtccttttttttttctcatttaaaaaaacaagtaatgcACTTAAAGACACTGTACTACAGGATACCAGATGGCTTTATACCCACTTAGATATTTGAATATTACATCTCTTCAGATATGCACTTGATCCTTACATCTATATTTTGCTtcctgggttttatttttaaagtttttaaatgcagagaaCTGAATTCTAAATCACATCTGTACAATGCAATACCTGTTCAATTGTCATTGTAATGTTAAGcaagtgattaaataaaatgtttatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30812 lncRNA upstream 43142 22144839 ~ 22148238 (+) False G24570
TU30811 lncRNA upstream 44034 22144839 ~ 22147346 (+) True G24570
TU30809 lncRNA upstream 56676 22132035 ~ 22134704 (+) False AMCG00007547
TU30569 lncRNA upstream 793333 21386225 ~ 21398047 (+) True G24384
TU30470 lncRNA upstream 1310456 20880546 ~ 20880924 (+) True G24311
TU30862 lncRNA downstream 59902 22263841 ~ 22266409 (+) False AMCG00007553
TU30934 lncRNA downstream 136797 22340736 ~ 22343616 (+) False G24654
TU30935 lncRNA downstream 136797 22340736 ~ 22342563 (+) True G24654
TU30982 lncRNA downstream 246168 22450107 ~ 22450404 (+) True G24692
TU30983 lncRNA downstream 249877 22453816 ~ 22454055 (+) True G24693
AMCG00007549 mRNA upstream 16625 22162204 ~ 22174755 (+) True AMCG00007549
AMCG00007546 mRNA upstream 32831 22153677 ~ 22158549 (+) True AMCG00007546
AMCG00007547 mRNA upstream 56666 22131573 ~ 22134714 (+) True AMCG00007547
AMCG00007548 mRNA upstream 61903 22123647 ~ 22129477 (+) True AMCG00007548
AMCG00007537 mRNA upstream 138759 22050281 ~ 22052621 (+) True AMCG00007537
AMCG00007555 mRNA downstream 837 22204776 ~ 22216240 (+) True AMCG00007555
AMCG00007557 mRNA downstream 28588 22232527 ~ 22261853 (+) True AMCG00007557
AMCG00007553 mRNA downstream 59581 22263520 ~ 22266286 (+) True AMCG00007553
AMCG00007556 mRNA downstream 64575 22268514 ~ 22274179 (+) True AMCG00007556
AMCG00007560 mRNA downstream 92115 22296054 ~ 22307259 (+) True AMCG00007560
TU30494 other upstream 1124597 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3135247 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3620916 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 3899042 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 3983072 18207078 ~ 18208308 (+) True G23698
TU30868 other downstream 77761 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 985521 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1988282 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5879883 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6249070 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile