RNA id: AMCG00007555


Basic Information

Item Value
RNA id AMCG00007555
length 2717
RNA type mRNA
GC content 0.42
exon number 16
gene id AMCG00007555
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22204776 ~ 22216240 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttattattatctgaaCATTATGATGAAGTTTGTAACCGGATCAAGGCGAAACAGAAACTATCGCTAAGTAAAGAAGTACACTGTGGAAAAACCTACTCGCCCATGTTCAGTCGTACATACGGAAAACCATCGCCCGGGCTTGACAACTATGGCAAGACTAGTGACTGCGATGATCGCTTTTGCGGTGTATCTGTGTGTACAGGTGAACTGCCAAGAAGCAATTTTACATGTGTCTATAAATGGATCCACAGACAATGGACGAGAGTATTGTATTTGGTATAATCCTGCTTTGAATACACTGTCAGAATCTCTTGGCAAAGCCGAGCTGTACCAGTTGGTAAACATGACCTCCATTGAACTCTGCAATGACTCAGGAGTACTTCCTGGGGAGCTGAAGGGCAAGGCCGTAGTGGTAATGAGAGGGACCTGTACCTTCCTTGCCAAGGCTAGAGTTGCTCAGGAGCTTGGTGCTAGGGCTTTAATTATTGCCAGCAAAGAATCTGTGTTCATCCCTTCAATGAATGTCTCTCAACATGAAAACATCACGATTCCTGTTGCCCTCATGAGGTATAAAGATATGTTGGAAGCTCAACAGATCTTCGGTGACAGTATGTCAGTGCAGCTCTACGCACCGCCTGTGCCATTCCTGGATCTGAGCATTGTGgtcatgttgtttatttcagtCTTCACTGTCACCATGGGGGGCTATTGGAGTGGTGCAGAAGAAAGGAAGAAGATGTCTTCGGAGCTGAATGCAGGCCCAGCGGGAAAGAGGGCAGAGAGCGGAGATGTGTCTTTGTACTCGCCCGTGAAAGTCGTCATTTTTGTGGTCCTGATGTGCGTGGTGCTCGTTTTGCTGTACTTCTTCTACAAATGGCTTGtgtatGTCATAATTTCGATATTCTGTGTGGCCTCTGCAATGGCCCTGTACAGCTGCCTAGATGCCCTGATGCAAATGATACCCTATGGAAAATGCAGtttttcatGCAAGAACACAACGTTTGAAGTGAGATCCCTCTTTCTTGCTGCATTCTGCATCACAGTTGCTGTAATATGGGGAGTGTACAGGAACGATGACAGATGGATTTGGATTTTGCAAGATCTACTGGGAATTGCATTCTGTCTGAATTTTCTGAAGACGATAACCGTTTCTAATTTCAAGATCTGTGTTATATTGCTGAGTCTTCTGCTGGTTTACGATGTGTTCTTTGTGTTCATCACCCCATTTTTTACCAAGAATGGAGAAAGCATTATGGTTCAGGTTGCTCTGGGACCCGAAGCTGCAGGTGAAAAGAGTGGTGGAGGAGCGGTGGGAGTCCCTGCTGAGTCCACAGGTGCCCATGAGAAACTGCCTGTCGTAATGAGAGTTCCTAGATTATTCCCCTCGGCTGCAAGCCTCTGTGGAATGCAGTTTTCCATCCTAGGATATGGAGACATCATTGTGCCAGgcttgctggtGGCTTACTGCCATAGATTTGATGTGTGGACCAACAACTCCAGGAAGATTTACTTTGCATCCTGCACAGTAGCCTATTGTGTCGGCATGATCTTCACGTTTGTGGTCATGATCCTGTCCAAGATGGGTCAGCCGGCACTCCTGTACTTGGTGCCCTTTACTCTGGTCACCAGTGCTGTGGTGGCTTTAGTACGCAAACAGATGAAACAGTTCTGGGCTGGAACTACGTATGAAATGGAGAACCTGAACACACCACTGTAGGACGAAGATGCTGAGTTTAATAAATGATCTGCTTCGAAAGTCTAATGGAGTGGAAGTTTTgggttcttttttatttatagtttgcaCTTGGAATAGATAGGGTTCCCTGATTGTGTTTAAAAGAGTGAATAAAATTAAAGCTTTAAGAGATGTTTCTGCATTTGCGATTTATAACTACGCAAGGACTGGTATTAGAATGAAACCCACAGTGATAAATGTGTTTCTTGAACAACATTTCTGAAAGTGTATAGATTATAGATTATAATTCTGGAATTAAAACCTCAGTTTAATCATAGGGATTGAACTTCGACATGATTGTGACTGCATTGATGATGATACTTAATTAAAGCACTGTATAATGAGagtaatattttatatagaCTATGTGCATATTGTTGGGGGTCTGGCCGGGTTGAAATGAGGTAAGAAACCAGGAAGGGTActttttgttggggggggggaggtctGTGCTGACACTAACAGTTTCTAATAACACtttaataagctttttgtgcaagaaagaaaagtaagCTTTTGAAGTACGATCAATCAACAATGGGGAACAGTTTAAGGTTAATTGCTTTATGCTCAACAGTGACCCCTATTAATGGCAGAGTCTTTATGAGACTGAGGGGAATCTGTGGGGCTGTTTGGCCTCCAGTTGATCTTTCAGCTCTGGAAGGGCATTTAAAATAGAACGGCTGGGTAACAGGTCTCAAAGGAGATGTGCTTTCTCCACCATCCTCAGTCGGTGTGGTGTGCAGTTGAACTTGAGGTGTACTTAATTGCAGGGtaaatttctaaaataaaaccaaaaacagtgGTAATTgtacacaatacaaaacaaaaacaaacttttgttctgtaaaagttattgtttttaaagctgtaaaTAATGGTAGTTATAAATGAACACAATGCACAAGCTGTTGCgatttatattgtaatttgtttggccttattgttttcattaaaatgttcacttccA

Function

GO: NA

KEGG:

id description
K09596 SPPL2A; signal peptide peptidase-like 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30852 lncRNA upstream 837 22189245 ~ 22203939 (+) False AMCG00007554
TU30854 lncRNA upstream 837 22189245 ~ 22203939 (+) False AMCG00007554
TU30853 lncRNA upstream 837 22191380 ~ 22203939 (+) True AMCG00007554
TU30812 lncRNA upstream 56538 22144839 ~ 22148238 (+) False G24570
TU30811 lncRNA upstream 57430 22144839 ~ 22147346 (+) True G24570
TU30862 lncRNA downstream 47601 22263841 ~ 22266409 (+) False AMCG00007553
TU30934 lncRNA downstream 124496 22340736 ~ 22343616 (+) False G24654
TU30935 lncRNA downstream 124496 22340736 ~ 22342563 (+) True G24654
TU30982 lncRNA downstream 233867 22450107 ~ 22450404 (+) True G24692
TU30983 lncRNA downstream 237576 22453816 ~ 22454055 (+) True G24693
AMCG00007554 mRNA upstream 825 22191403 ~ 22203951 (+) False AMCG00007554
AMCG00007549 mRNA upstream 30021 22162204 ~ 22174755 (+) True AMCG00007549
AMCG00007546 mRNA upstream 46227 22153677 ~ 22158549 (+) True AMCG00007546
AMCG00007547 mRNA upstream 70062 22131573 ~ 22134714 (+) True AMCG00007547
AMCG00007548 mRNA upstream 75299 22123647 ~ 22129477 (+) True AMCG00007548
AMCG00007557 mRNA downstream 16287 22232527 ~ 22261853 (+) True AMCG00007557
AMCG00007553 mRNA downstream 47280 22263520 ~ 22266286 (+) True AMCG00007553
AMCG00007556 mRNA downstream 52274 22268514 ~ 22274179 (+) True AMCG00007556
AMCG00007560 mRNA downstream 79814 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007559 mRNA downstream 106484 22322724 ~ 22331465 (+) True AMCG00007559
TU30494 other upstream 1137993 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3148643 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3634312 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 3912438 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 3996468 18207078 ~ 18208308 (+) True G23698
TU30868 other downstream 65460 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 973220 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1975981 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5867582 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6236769 28453009 ~ 28454707 (+) False AMCG00007735

Expression Profile