RNA id: AMCG00007558


Basic Information

Item Value
RNA id AMCG00007558
length 4912
RNA type mRNA
GC content 0.48
exon number 19
gene id AMCG00007558
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22276111 ~ 22288236 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACCTCCTGCTGATATGACGTCATGGGTTGAAGCTGCTGTGTGAGTGACAGTACGGAGTTTGTTCCGGGAATCAGCTACACTGGAAACAATAACAGTCCGATAACTTCGAGCTGtgGGAAGAACCATGAACTAGTGCAAGAGCATGTGAAATTAATTCCACAACAGTCCCAAGATATCTGCAAAGATGCCATCAGTATCCGCTGGAGTGAAAGAACTGTACCTTTCAACATCTTTGGGTGAACTTAACAAAAAAGCTGAGGTTAAGCCAGACAAAATCAGTACCAGAAGTTATGTTCAGAGTGCCTGTAAAATCTTTAAGGCCGCAGAGGAGTGTCGCTTAGACCGAGATGAAGAAAAGGCGTATGTTCTGTACATGAAATACCTGGCTGTCTATGACCTTATTAAAAAAAGGTCCGACTTCAAGCAACAACAGgAATATTATCTTTCTATGCTTGGACCAACAAGCTTTAAAAAAGCCATAGAGGAAGCTGAAAAGCTATCTGACAGCCTTAAGCTCAGGTACGAGGAAGCGGAGGTGCGTAAAAAGctggaagaaagagaaagacaagaggaaaagaaacagagggaggaaaaatctgaaaaggaaCTGGGAATTAGTTCATTGAAAGAGATAACAGAGtccaagaaagaaaataagaagATTAAAGGGGATCTGAAGGATGCGAAAACTGATGCCCCAAAAGCGTCCGCCCCCCCGGGAGGAATCACAGCTGAGAAGCTGTTTCAGATGATAAAGGACCCAAGTATGACTGTGATTATCATGGATGCTAGGAGCATGAGGGATTACCAGGAGTCTCGAATTCAAGTGCCTATGCAGAAATGCATCAGCGTTCCTGAGGAGGCTATCAGCCCAGGGATAACTGTCAATCAGATTGAGGTGAAGCTCCCAGAAGAATCCGAAGTGCTGTGGAAGCAACGAGGCTTTGCGGACTACATTGTCATACTGGACTGGTTCAGCTCGGTGAAGGACCTGACACTTGGGACCACACTGCAGAGCCTGAAGGATGCCCTGTTCAAGTGGGACAGTACGACCATTCTCCGCAGTGAGCCCTTGGTGCTGGAGGGTGGCTATGAATCCTGGTTGCTATTCTATCCCATGTATACATCCTACGCCAAAGTCAAACTACCAAGGCAAGAAACGACTGAAAACCTGCCTAATTTGTTGAATTTCAGCTACCCGTCTTTAGAGGAGCCCAGGCCCCCAACCCCTCTCGAGCCGGAGCCAGAGCCCGAGCCAGAGCCCGAGCCCGAGCCACCTGTCGAGATGAATGGAAAGAGCTCTGCTGAGGAGGAGCCTGCACCAGAGGAGACTGTCGAGTTCCCAGAGACCCCCAGGGCCCCGCCCATGTCCCCTCCCACCGCTGCAGCCAAACCAGGAATGGTGTCAGCCAGCCAGCCTGCAGCAAAGGCTATTCCACAGattGATCGCAGTAAAAAACCTTCAGTCAAAGTATCTGATGGTGTCAGACCAAATAATGATGCCACAAATAAGGACCAAACACCAATCCAGAATGGACCTGTCATTCCCGACCGCTCTATAAAGCCAGCGCTGGCAATCAAAAACTCTCTGACAGACGAGGAGAGGAGCCAGATCCACGCCGAAGCCACTCACATCATTGAAAAGGCCAAAATGGAGCAAGAGCACAGGAAGCGTGAGAGGCAGGCGCAGGAAGACCAGCGCAGGGAGGACGAGAGGTTGGAGAAGGAGAGGCAGGAGCAGAGGCTGAAGGGGGAGAAGGAGCAGGAGGAgcgcagggagagggaggaccGGGAGAAGGAAGACAGAGAGCGGAAggtaaagaaagagaaagatggCCAACACAAGGAGGATCTGGAAAGGAAGAAACTGCAGGCAGAgaaggaagagcaggagaagaaactgaaggaagagagagagcaagggcAGCAGAAAGATCGGAGTGCAGACTCAAAGGCAAATAAGATGTCTCGTGAGTCTTCTCCAGAGAACGTCCTCATCAGTCAAGTCAAGCGTGAGCCCCTGACTCGAGCACGGAGCGAAGAGATGGGCAGGAGTGTGCCTGGGCTTCCAGACGGCTGGATGAAGtttttagaTATCGTGACTGGAACATACCGCTACTACCACTCCCCTACCAACATGGTGCACTTGTACCCTCCGGAGATGAGCATGTCCCAGACGCCCCCCGCCACGCCCCCTACGCTCAAGCAGAAGCTGGCGCGGGTGGCAGAGGCCGACAGAGAGCAGCACTCCAAACTGAAACGCTCCTACTCCTCGCCTGACATCACCCAGGACATCCAGGAGGAGGGCAAGAAGAAAGTCACCGTGACCCCCACCATCAACCGGGAGACCAAGCCTCCCAGCCTCATCACCTACACTAAACCTGAGATCTCGCGACCGTCCGCAGCCAAGATCCGGAACTTGAACCCTGTGTACGGCGGCCTGGGGGCCTCCCTGACCGGCCTGCGCAACCTGGGCAACACCTGCTACATGAACTCCATCCTGCAGTGCCTTTGCAACACACCTGGAATGGCTGAGTACTTCAACAAGAACATCTACCAAGATGATATCAACAGGGGTAATATCCTGGGCCACAAAGGAGAAGTGGCAGAGGAGTTTGCCGTGATAATGAAAGCCCTGTGGTCTGGGCTGTACAAGTGCATCAGTCCTCGAGATTTTAAAATCACTATTGGAAAGATCAATGACCGGTTCACAAGCTCTGATCACCAGGACTCCCAGGAGCTCCTGCTGTTCCTCATGGATGGGCTCCACGAAGACCTGAATAAGGCTGACAACCGAAAGAGGTACAAAGAAGAAAGTAACGACCACTTGGACGACTGCAAAGCAGCAGAACTGGCGTGGAGCAAACACAAGCTGCTCAATGAGTCCATCATCGTGGCTCTGTTCCAGGGCCAGTTCAAGTCCACTGTGCAGTGTCTGACTTGCCACAGAAAATCACGCACCTTTGAAACATTTATGTACTTATCGCTGCAATTAGCATCCACAAACAAGTGCAGCCTGCAGGATTGCTTGCGGTCATTTTCAAAAGAGGAAAAGCTGACTGACAACAACAGAGTATTTTGTAgtcactgcaaaacacacagagattCAACCAAGAAGTTAGAAATCTGGAAAGTCCCCCCGATTCTGTTAGTGCATCTGAAGCGATTTTCCTATGAGGGAAGGTGGAGACAGAAACTCCAGACATATGTGGATTTCCCTCTAGACAACCTGGACCTCTCCCAATATGTCATCGGCCCAAAGCacaccttaaaaaaatacaatctctATGGAGTTTCTAACCACTACGGGGGTTTGGATGGAGGACACTACACGGCCTACTGTAAGCATGCGATAAAGCAGCGCTGGTACAAGTTCGACGACCACGAAGTGACCGATTTCTCAACATCTTCAGTCAAGTCCTCGGCTGCCTACATCCTGTTCTACTCGTCTCTGTAGCTGCGAAAGACTGGAGCGGCAGCACCATAGTCCTGCATGCTTGCAAGCTGCTTCcggagaaggaaaataaatgaaaaggttCACGGCCTCTTGCTGAGGTCCTGGTTAACAGTTTGCAGGTCTGATCTCACGCATTCGTTCAGCTGCAGTGCGAGGGGTACACGCTGTGATGGCATCCGGTTCCTGCTGCGGCACCTCAGTTCATAGATGATTACGTAGCagttaagaacttaagaaaatAGCAAGAAGGAGGAGTATACTCAATGTTGCCACGGGACGGGTGTAAGAACAATCGCAGTGAAATGTGCCTGCAAGGACTGCATACTGAGATTACCCAGTCTGCAAACCCCTTTCTTTATTGTATCGTAGTTCTGCTGGAACCCCTGTAACGTTCTAATTCTGTTCTTTCTTGGTTTCAGTGTGATGGCCTTTTCACAATACTGACCTTAAGCTTTCCTGTACTGTGAATATATTAGATTGAACAGATAGGAATGTACGTGTACATAGTAATTGCAAATCTTGCACATTAAACCTAACTGTGTACATATTGTGAAAGATAAATGTTCCTTTATTCATTAAGTGACCACGTTCGGTTTCTGAAGAGGAAGTTGCATGTTCGGTATCACAGATATTATAATTTAGACTATAATAGACTGCTTGGCTTACTCCTGACTATACCTTGTGTAGGGATGATGATTATAGGGTTTTTTTCGACAGCTTTTGCTATATTGGTGGGGAATAAAGTGTTAATTTGGGACCACTTCTGTTTTGAGTCAATCTGACAGCGTTGATGTTCTATTTTAATAATGCTCCAAAATCAGTTGATCTCAACACCAGTTGTGTCTGCTTCCCTCCCTGTCTGCCCTCATTGCAGTGTCCCCTCATGGTCGATTTGGTCATGCGGAGGCATCACAGCTCATCTAAAAGTCTTCTCATTTAATCATGATTTAGCATAAGCAGTTTCACCCAGAAGAGCCAGACTCTTGATGAATCATTCTATTCCCAATGGAGGATTGTTTCTGTGGTGAAACAGTAAGGCCTTGAATTTGCACTTCATGACTGATTACAGTAactggaggggtgggggtggggactGACCTCATACAGCTACATGACCATTGATAATAGGAAAGTGTCTGGAAGCTGGATGAGTCTCATGAGTCAGAATTTTGTAGAAAGAGGAGAACACGTGGTCACATGTGAAGCCCCAGAGGGAGAGTCAGTGGAGGGCACACTGCATGCTTTTGAATCTTCCCAATCAAAGGTATATTTCCTCGGTAGCATGAACTCACTCTCACTGTCTTCATTTGACATTATAAataccttttttgttgttaaaccTTTTGCTTAAAATGCTgtgaagattatttttattatattctaaTCTATATACTattacagattatatatatatatataatctgtaaatctccattaaattcaaacatttca

Function

GO: NA

KEGG:

id description
K11839 USP8, UBP5; ubiquitin carboxyl-terminal hydrolase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30913 lncRNA downstream 13618 22260847 ~ 22262493 (-) True G24640
TU30830 lncRNA downstream 142130 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA downstream 142130 22131389 ~ 22133981 (-) False G24579
TU30786 lncRNA downstream 266678 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 332440 21942952 ~ 21943671 (-) True G24515
TU30958 lncRNA upstream 67214 22355450 ~ 22358446 (-) False AMCG00007565
TU30974 lncRNA upstream 143831 22432067 ~ 22432313 (-) True G24687
TU30996 lncRNA upstream 158134 22446370 ~ 22448954 (-) True G24705
TU31016 lncRNA upstream 230186 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 275855 22564091 ~ 22576454 (-) False AMCG00007572
AMCG00007552 mRNA downstream 94990 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007550 mRNA downstream 122611 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007551 mRNA downstream 158009 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007543 mRNA downstream 207418 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007542 mRNA downstream 227746 22042455 ~ 22048365 (-) True AMCG00007542
AMCG00007566 mRNA upstream 43830 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007565 mRNA upstream 52363 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007564 mRNA upstream 161049 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007571 mRNA upstream 187174 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007573 mRNA upstream 244420 22532656 ~ 22535178 (-) True AMCG00007573
TU30382 other downstream 1803407 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 1944300 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2352958 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3498473 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4217162 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1683435 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1977588 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2976096 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3342559 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12581199 34869435 ~ 34869807 (-) True G26961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025042 True 4181 mRNA 0.55 18 NC_007129.7 95770 ~ 107697 (+)
grasscarp (Ctenopharyngodon idella) CI01000166_00608130_00615243.mRNA True 3626 mRNA 0.53 19 CI01000166 607300 ~ 615243 (-)