RNA id: AMCG00007559


Basic Information

Item Value
RNA id AMCG00007559
length 1899
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00007559
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22322724 ~ 22331465 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAGCGGAGGAATACAACCGCAGAGGTAAAGAGCTTGTCGATTACATCACTGAGTACCTGACCAAGATCAGGGACAGGCGGGTCCATCCAGATGTGCAGCCAGGGTATTTGCACCAACTGCTGCCTGGCAGCGCGCCGGTGGAGCCTGAAAAGTGGGAGAATATTTTCAGCGACATCGAGAAACTGATCATGCCAGGGGTGGTGCACTGGCAGAGTCCCCACATGCATGCTTACTTCCCGGCTCTTACCTCTTGGCCCTCGCTGCTCGGAGACATGCTGGCAGACGCTATTAACTGCCTAGGATTCACCTGGgccTCCAGTCCGGCTTGTACCGAGCTGGAGATGAATGTTCTGGACTGGCTGGCAAAAGCCCTGGCGCTGCCCAATTCATTCCTCCACCATCACCCTGACAGCTGCGGAGGGGGCGTCCTGCAGAGCACTGTGAGTGAGTCGACACTCATTTCCCTTCTGGCGGCAAGGAAAGCTAAAATCCTGGAGATGAAGGAGTCCCAACCCGAGGCGGATGATTCAGTACTGAATTCCAAACTCATTGCCTACACATCTGATCTGctttgtGCAACTCTAGGGACAACTGGAGTGTGTTCTTTTGACTGTTTGTCCGAGCTGGGTCCAATTTGTGCCAGGGAGGGGCTCTGGTTGCATATAGATGCTGCTTATGCCGGCACTGCCTTCGTCTGTCCAGAATTCAGGGGGCTCCTGGATGGTGTTGAGTATGCAGACTCATTTGTCTTCAACCCCTCGAAGTGGATGATGGTGCATTTTGACTGCACTGCCTACTGGGTGAAAGATAAGTACAAGCTTCAACAAACCTTCAGTGTCGATCCAATCTACCTCAGACATGAGAACTCGGGTGCAGCCACTGACTTTATGCATTGGCAAATTCCCCTCAGCAGAAAGTTCCGGTCTCTGAAGCTGTGGTTCGTGATGCGATCTTTTGGCATAAAAAACCTTCAAGCACACGTCAGGCATGGTATAGACATGGCAAAGCTGTTTGAGTCCCTTGTTAGAAGTGATCCTAATTTTGAAATTCCTGCACAAAGACACCTTGGTCTGGTAGTGTTTCGCTTAAAGGGAGGAAACACTGTTACGGAAGAACTCTTAAAGGCCTTGATAAAATCAGGCACCATGTACCTCATACCTGCTGCCATTCATGAAAAGCTGATCATCCGCTTCACTGTGACATCCCAGTTCACGACTAGAGAAGACATTCTAAGGGACTGGGGCATCATCCGCCAGACCGCCACTGAATTACTGCATAGGGGCTCAGTGGACCAAGCCCTTTGCAGGGCAGCACAACAGTCTCAAAGGAACAGCAGTGTTGAAGGTAGTGCCCAAGCTAAACTAACTCCTGGCCCAGAGCCACATCAATTCAGAGCAATAAAGAGGCATTCTGTGAGTGAGCCACGGGGGGCTGGTCCACAGGCTGAGCCACTCCACGACCCCTTTAATGACACCTTCCTCACGGATGTTCAGAAAGCCAATAAATTCAAACAGGCCTCTCTGATATATAGCCACCTTTCAGGCCAAGGTCAGAGAAAGACCGCCCGCTCCTTGAGCTGCAACAGCGAGCCCATAAGCAGCCTCAAAGAATTCAATATTCTGCAGCAGGTATTCAGAGATGGGCCAGTCAAGAATGGCTCTCGCATTAAAGAAGGCCTCCTATCCAAGCTCCCCGAGAATGTCATCCTGCTAGAGAAGAGAGCCCTTAAAAAACTCACCAAGTTTTACAGTGTTCCTAGCTTTTCCCAGTGTGGCTTGCAGTGCGGAATACAGCAGCCGTGTTGTTCCTTGAAAAGCCTGCAGATATTCCCTAAACCCTGGTTCACCTGCAACAGGGTGAACGCTGCCCTCACCTGCCTCAAACACCACAGCTAA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01590 hdc, HDC; histidine decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30862 lncRNA upstream 56315 22263841 ~ 22266409 (+) False AMCG00007553
TU30852 lncRNA upstream 118785 22189245 ~ 22203939 (+) False AMCG00007554
TU30854 lncRNA upstream 118785 22189245 ~ 22203939 (+) False AMCG00007554
TU30853 lncRNA upstream 118785 22191380 ~ 22203939 (+) True AMCG00007554
TU30812 lncRNA upstream 174486 22144839 ~ 22148238 (+) False G24570
TU30934 lncRNA downstream 9271 22340736 ~ 22343616 (+) False G24654
TU30935 lncRNA downstream 9271 22340736 ~ 22342563 (+) True G24654
TU30982 lncRNA downstream 118642 22450107 ~ 22450404 (+) True G24692
TU30983 lncRNA downstream 122351 22453816 ~ 22454055 (+) True G24693
TU30985 lncRNA downstream 123801 22455266 ~ 22456761 (+) True G24695
AMCG00007560 mRNA upstream 15465 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007556 mRNA upstream 48545 22268514 ~ 22274179 (+) True AMCG00007556
AMCG00007553 mRNA upstream 56438 22263520 ~ 22266286 (+) True AMCG00007553
AMCG00007557 mRNA upstream 60871 22232527 ~ 22261853 (+) True AMCG00007557
AMCG00007555 mRNA upstream 106484 22204776 ~ 22216240 (+) True AMCG00007555
AMCG00007561 mRNA downstream 22147 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007562 mRNA downstream 77463 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007563 mRNA downstream 110530 22441995 ~ 22448954 (+) True AMCG00007563
AMCG00007569 mRNA downstream 131641 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007567 mRNA downstream 187031 22518496 ~ 22520287 (+) True AMCG00007567
TU30868 other upstream 39766 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1255941 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3266591 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3752260 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4030386 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 857995 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1860756 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5752357 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6121544 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6671630 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile