RNA id: AMCG00007563


Basic Information

Item Value
RNA id AMCG00007563
length 2231
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00007563
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22441995 ~ 22448954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGCTTTACTGGTCAGTGTTATTTAAAACGAAACGTATTTTGTTgacatacttttttttatttaaatcggTTAGCGGGTATACGCGGATCATTAGTGCTCAATAAGATGGCATCCGGTGTGGCCCAGCAGAAATCGTGCCTTACTCTTCGATGGGATCAGCCTAACCCACCAGCAACTATGCTGCACGGTTTCACAGGAAATCTCCCCCATTCCCATTCAACGCCAGTAGTTTCATTGCCCAGTTACATGGCAAACTTGGGCACTAGCACGCCCCTACCCACTAATGGAGGGAAGATGTCTACCAGCGTTGCTTTTACCAGTTACACAGCGGCCTCTGCAGCCAACGTCACCAACAAAGCTCTTCCGAATTGCGTGCCAGAAACCCGCACGACTGCAGGGGGCGCAGTCGAGGTGGCCGCTGCAATGGCTGCGAAGCTTAATGCCATGCTGATGGCCAAGGGGAAATTAAAGCAGCCCCAGACAACACCAGACAAGCCTGTAACCAGTGTCACAGTTTCCAGTCAAGGCGATGACATGGTTGTTACCGAATTGGACATTAATGATGTTCCTAtaaactgcagaaatctgctCACAAAAGGACAGACCCAAGAAGAAATTCACCAATACAGTGGTGCTATAGTGTCAACTAAGGGCTACTACATGACTGTGGTTGAAAAGACACAGGCCAAAGGAGTgGACAGACCATTGTATTTACACGTTCAAGGAAAGACCCAGGAGGAAGTcaataAGGCCGTGACACGCATCAAGGAGATTATTTCTGAAGATGTTCTGAGGGCAGCATTGGGACAACCAGCGCCGGTTATTCCAACCGTTCCTGTCTACAGCCATCCAGCCAGGCCCCCTGCTTCTCAGCCGCCCCGAGCTCCTATCCTGCCCCTCCCTCGGCCACCTACTCCACAGCACCTCCGAAACCCCAACCCTCCAAGCCATAGGCCTCCAACCCCACAGAGCCACCGGTCTTCATCCGGACAAGGCCACGGTCATTCAGGGAATTTTGTCCACACCAAAATATTTGTGGGCTTGGACCAGGCCCTGCCCTCTTTCAATGTGAATGAGAAAGTTGAAGGCCCTGGTGGATCATACCTGCAGCACATCCAGAGTGAAACTGGAGCACGTGTCTTCCTCCGAGGAAAGGGCTCTGGGTACATCGAGCAGGCCTCAAGGCGGGAATCCTTTGAGCCGCTGTACCTGTACATCAGcCACCCAAATTCAGCAGGTTTGGAAGCAGCGAAGAAGCTCTGTGAGAGCCTGTTAGAAACGGTGCGTGTGGAACACTCTCGAATGGTTTCAGTTTATACAGCAACTGGGTCTACGCAAGCATACCCATCTTCTCATGGATACCCACCTAATAGCAATTACTGTAGCCAGGTATCCTGGTATAACTACCCATCAAATGGTTACATGGGCGCCTATTCTGCATATCCAGGATCCAGTGGTTATTGGAGTAGTTCAAATGGTCATCACAGTCATTCTAACATTTCGACAACCCCTCAATCTTCTCAGGCAATGGTTCAGTATCCAGTGTGTCCTAGGAAACCACCACCATATTTAGAACggTGTGGACCAGCTGATGGACCTAGCTGCTCAGAAGGCCCTGCCGCCCTGAAGCCTGAGGAAACTTCCCCTGCAGCCAGTAACGAGTGTGGAAGACGACTGGAAAGgatgttaatgcccccacctccccctccctgcAGTGGAGTTGTGCGCAGCAAGAGACCTAGGCCAGTGGAGTGCCCAGGTGGTGCCCAGTCCACATTGGATATTGGCGATCAAGTCACTTTGACTAAGAAACCGAAGCTGAAGGAGGATGTATTGGGGTTAGTCCCGTATGGGGGGGATTCATCTGATGAAGAGGAAGACCGAGTTCGGGGCAGTAAGAAGTCTTTCCAGTAAACTAATTTGGCTATTGGCACTGTAAAGGTGGAGCGGGGTTTTGCACAACAGGCTTtggaggaaaaataatattttctccaCCTCAAACACAAAgaacttttaaaatctaataaaCTAGTTGCTTCCACTAAAGGTAGACCTTTTTATTCCTGTCCCCTCTACCCTGCCCTCACAAAAATCAGTCCTATCATTTGAAATGCACCAACACTGCTGTCTAGTACTTTCATACTGTAACTTTTCAGTGAAACATTTCTTACATGAGAAATTAGTGTTCTTGTTCCCATGgaatactgtaataaaatattttgaatgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30934 lncRNA upstream 98379 22340736 ~ 22343616 (+) False G24654
TU30935 lncRNA upstream 99432 22340736 ~ 22342563 (+) True G24654
TU30862 lncRNA upstream 175586 22263841 ~ 22266409 (+) False AMCG00007553
TU30852 lncRNA upstream 238056 22189245 ~ 22203939 (+) False AMCG00007554
TU30982 lncRNA downstream 1153 22450107 ~ 22450404 (+) True G24692
TU30983 lncRNA downstream 4862 22453816 ~ 22454055 (+) True G24693
TU30985 lncRNA downstream 6312 22455266 ~ 22456761 (+) True G24695
TU30988 lncRNA downstream 10066 22459020 ~ 22459517 (+) True G24698
TU30989 lncRNA downstream 10930 22459884 ~ 22460313 (+) True G24699
AMCG00007562 mRNA upstream 10150 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007561 mRNA upstream 77801 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007559 mRNA upstream 110530 22322724 ~ 22331465 (+) True AMCG00007559
AMCG00007560 mRNA upstream 134736 22296054 ~ 22307259 (+) True AMCG00007560
AMCG00007556 mRNA upstream 167816 22268514 ~ 22274179 (+) True AMCG00007556
AMCG00007569 mRNA downstream 14152 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007567 mRNA downstream 69542 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007570 mRNA downstream 87931 22536885 ~ 22549409 (+) True AMCG00007570
AMCG00007568 mRNA downstream 103736 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007575 mRNA downstream 228092 22677046 ~ 22685708 (+) True AMCG00007575
TU30868 other upstream 159037 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1375212 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3385862 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3871531 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4149657 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 740506 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1743267 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5634868 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 6004055 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6554141 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile