RNA id: AMCG00007564


Basic Information

Item Value
RNA id AMCG00007564
length 3184
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00007564
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22449285 ~ 22470431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCGACACAGGCTCTTCATGGCAGGAGAGCTGCTGTCCCTCAGCCTCCCTGCCTCCTCCATCTGCAGCTCCTCTGGGTTCTCACACGCAGTGATCATTCTGCTGCCCTTCAAATTCAACATCAAAGAGAGCCGCATGGAAATACGCAACAACGGCAGTTCGGCACATCTTACACTGTTCCGGATATCCTCTTTCTTGCGGTTCAGGCACATTTCTTTGGCCCTCATATGCTGCAGTGTCTCCTTGGCCAACATGAACTTCAGCTTTTCCAGTCTGGGGGCAGCCGAGGCCCAGGAAGCAGGGCCAAACTTCTTCTTATCCTCCTCCATGTTTTCGAAGTACTCTTCCACGTCCCGCACATCCTGCACGAACAGCGAGTCCAGCACGATCTTGCGGCCGCACACATCCACCGCGGTGCTGAAGTACTTCTCCAGCTGCCGGCACGGCGTGTCCAGGTCTTTCTCGGGGTCGTCTAGGCTGGAGGTCCTGTTCAGGAATAACAGGTCCCATAGGTTTCCCCCTTCCAAGTCACTCAAGTTGGGAAAATACGGCTCCAAGACGTCACCGACCCCGGGTCCGGTTGTGACAGGTGACAGCAAACTTGCACTCGATTACATTCCACTGCACGATGAAGCCCAGCTTAAAAGTCTCGTTTTCTTCAAAGGCGTTGCTTTTGATGGCCACCCACCCGTCCAGACTGTCCATGCGTTCGCAATCCATGGTCATACTCTTGAGGTTTTGAAGACCAACCTTGTTGCAGTACTGCTGCCTTTCAGAGCAATGGCAACCAAAGGTGAAATATCCGGCCCTTCCAGGTCAGCTTCTGATGGGGCCACTAAGGAGTTCATCTTCGGTGGAGGAGATGGCATCCTGAGTAAGGCATCTGTAGATACACCTGTGCTCACCGACACTACCAATGTAGAGCTTGAAGGTCTCAGTTTTTATAACATGGACCTCTACGAGTCACGGGAAAGGTTAGACATATTCACAGAGGAGGTGGTTGTGAGCAGAACAGAAGATGACCAGTTCACCCCAACCATGAGTCCCTTAGAAAGAGCTCaaagaacagaagaagaagaatatgaTCTGTACACAGCAGAGGTGACTGAAATGGCTAAGCAATACGGGGTGTGGGATGACAAGGAAGAAATTGACACTGAGTTCCCCACCCAAGAGCCGTACATTTTAgtaacagaaaggaaaaaagagctGGCTGGCAAAGGCTGGAACAAGGAAGTGGAACAGACTGCCAGCAGTCAACCAGAAAGGCTGGATTTGGAAGAGGAGATAGGAAGGATCTGTCAACCAGCATCCACTGGTCAGCATTTCTCTGTGGAAACAAACGAGTCCTTATGCTTCGAATCCTACAACCCATCTTATGAAGACGAGCCTCAGCCACTCAGGCATTTTGTTGTGCAAGAGCAGGGCAGCGAAGAGGTGTTCGAAGAGGACAAGATGCATTTCACAAGGTCAGAGATGCCCACAAAGGCAAGGCTGCAAGAGTTCAAATATTCTGAAGAAAGCCAAGAAGATCCACCAGTCGATGAGAAAGGCGACACAGAGATGGAGGAGCAGCATAAGGCAGCAGGTGGTGATGAGAACGAGCCTCctgatgtgttttgtattgactGTAAAACCCCAATCAGGGCTTTCCAAAAGCTCTTCGGACCCCACAAGGATCATAGTGTGACCCAGATATCGAGCGCCGCTGAAGAAATCAAGGAAAACTTTGGGAGGCAGGAGCAGAACCTGGAGCAGCACTGTAACGAGGTGATGCAGACTCTTGCCCAAAGGTACGAGGAGAAGGTGTCTGGACTGGAGGtggagaagaaacagaaacTGGAGGCCTTGTACAGCCAGCTCATCAGCTGTGGAGAAACATTAGACATATCGAAGGGCCTGATAGAGACCGCCCAGGAAGTTCACAGAAATGAAGACAAACTCACCTTCCTTCAGGTTTGTGCGCCATATGTAAAATATAAAGAACTCACTAAAACTGAAACAGATCTCAATCTGTCTGCGTCCATGGAGTTTGAAAACTCCACTATAGATTTTTCAGATGTCAGACAGATGATGGATTCTATTAATATTGTACCAGCTCCCTCTGCTCCCGTTATAAACCCTCAGACCCCTAACTctgccaccagcacctcagtgCGAGTCTGCTGGAGCCTGTTTTCAGACGACACGGTGGAATACTATGAGCTCTTCTACAAACCCGTGCTGGAAAACACCACTGCAGAAGAGGCCAAAGAACAAGACGCATCTATGTTAAAGGTGAAAGAAACATACTGTACTGTGACTGATCTGGTGCCAAATACACAGTATGAGTTCTGGGTCACTGCACTGAACACCACTGGAATCAGTCCAGCCAGTGAGAAAGCTGTGTACATGACAGTCCCATCACCCCCTTTCATTAAGCACAAGGAATGCAGAAGTTGTCCAAATGCAGCACTAATTCGCTGGGAGTCAGGGAACACCAACCCTGTGGACTCCTACACCGTGGAGCTGTGTGAGATCAGCCGAGAGAGGAACGAGAACGCTGTCACAGAatCCATTGTTGGAATTCCAACCTGCGAGTCTTTAATTCAGCTACAGACAGCAAAGCGCTACCTCATTTATGTCAGAGCAGTTAATATAGGAGGACTCAGCGAAAGAAGTACATTCTTCCACCTGAATGAGGAAACGGCCCACCCATGCCTGTCTATCTCAGAGGATGGCTTTACCATGTTCTATGGAGATGAAGATATCGAGTTAAGCGACATGACCTTCAGTGACAACACATTCGCCAGAGGAAAGCATTACTGGGAAGTAGAAGTAGAAGAAACCACAGAGTACAGGATCGGTGTGGCTTACCAGGACACCCAGAGAAATGGATATTTGGGTGGGAACAATACATCGTGGTGCATGAGGCATGTGATTACCCCCTCAAGacacaaatatgAATTTCTACACAATGGATGGAGTCCCGATATAAGAATAACAACTCACCCAAAGAGAATAGGGGTGGCACTGGACTATGACACAGGGACGCTCTCTTTCTTTAACACTGACCTGGCACAGCACCTTTACACATACGAGTGTCAATTCCTGCACTATGTACACCCTTGTTTCGCTTTAGATAATCCAGGAGCCCTCACTGTTCATAATGGCATCGAAGCCCCTGAATACACACAGTTCTCC

Function

GO: NA

KEGG:

id description
K24490 FSD2; fibronectin type III and SPRY domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30996 lncRNA downstream 331 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 16972 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 90839 22355450 ~ 22358446 (-) False AMCG00007565
TU30913 lncRNA downstream 186792 22260847 ~ 22262493 (-) True G24640
TU30830 lncRNA downstream 315304 22131389 ~ 22133981 (-) True G24579
TU31016 lncRNA upstream 47991 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 93660 22564091 ~ 22576454 (-) False AMCG00007572
TU31117 lncRNA upstream 483654 22954085 ~ 22954844 (-) True G24797
TU31120 lncRNA upstream 575682 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 663360 23133791 ~ 23134802 (-) True G24816
AMCG00007565 mRNA downstream 91875 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007566 mRNA downstream 112211 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007558 mRNA downstream 161049 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007552 mRNA downstream 268164 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007550 mRNA downstream 295785 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007571 mRNA upstream 4979 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007573 mRNA upstream 62225 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007574 mRNA upstream 75103 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007572 mRNA upstream 91065 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007576 mRNA upstream 113298 22583729 ~ 22618108 (-) True AMCG00007576
TU30382 other downstream 1976581 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2117474 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2526132 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3671647 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4390336 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1501240 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1795393 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2793901 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3160364 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12399004 34869435 ~ 34869807 (-) True G26961

Expression Profile