RNA id: AMCG00007565


Basic Information

Item Value
RNA id AMCG00007565
length 2605
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00007565
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22340599 ~ 22358446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAACCAGCAAACACTGGTGTCCTCAGGACTGGGTTTACAAGGTCCCGTCATAGGCAATGTGCAAGGTTCCTACAACTCTCACCTGACTCCTTTGTACAAAGATATCACGTCCAGCTCGAATGAAGTCTGCAGCATCGAAGCACGGCTCATATTCCGTGTGGTAGCCGGAGTGGCTATTGTGCCACTTCTTCTGCAGTCTCTTTTCCCTTACTTTGTGCAAGATTGCCTCTACATGGCGAATTTAGTACGGATTATGACAAGATTTGTCATGCGTGGAAGAAGAAAAcctgtgtttttggttttgaataGGTTTTTGGAGCAGGTACATAAGCATCCTGATAAACCCTTTATCGTGTTTGAGAATAAGACATATTCTTACAAGGAATCGGATGAAAGGAGCAATAGGTTTGCCAGGGCTTTACAGACGCATGCTGGTCTGAAGGCGGGAGACACGGTGGCATTATATATGGGAAACGAGCCTGCGTTTCTTTTCACCTGGCTGGCTCTGGCTAAACTAGGGTGCCCGGCTGCACTGCTTAATTACAATATCAGAGCAAAATCCTTGTTGCATTGCTTTGGTTGTTGTAATGCAAAAGTTCTAATAGCAGCTGCAGagctgaaaGATGCCGTGGAGGATGTGCTACCTTCCCTCAGAGAGAAGAGGGTATCTGTGTTTATCATCAGTGCACAGTGTAACACACCCGGCATTGAATCTTTTGTGGACAAGATTAATGAAGCCTCTGAGCAGCCTCTACCACAATCTGTGAGATCAAAAATTACCATTAAAAGCCCAGCTGTTTACATCTACACATCTGGAACGACTGGTTCAACCATAATTTTGAGGCAAAAGTTTTCAGCCTCTCAATTCTGGGATGACTGCAGGAAGCACAATGTCACAGTGATTCAGTACATTGGAGAGGTGATGCGCTACCTGTGCAACACGCCAAAGAGAGACAATGACCGAGATCACAAAGTGAGAATTGCAATTGGCAATGGTCTCAGGGCAGATGTTTGGAAAGACTTCCTGAAAAGGTTTGGAGACATTCGAATCACTGAGTTTTATGGAGCCACTGAAGCGAATATTGGCTTTGTGAACTACGTAGGGAAGATTGGTGCCATTGGACGGGTTAACTTTGTACAAAGGAAACTATTCCCATATTCTCTGCTTAAATATGACATTGAGAGAGAAGAGCCAGTGAGGGATTCCAGAGGGTTTTGTGTGGAAGCTGCCAAAGGTGAGACTGGTCTTTTAGTATCAAAGATCACCAAAATTGCTCCTTTTGCTGGATATGCCAAAAACCAACAGCAAACGGACAAGAAGAGATTGAGGGATGTCTTTATGAAAGGAGACCTGTATTACAATAGTGGAGACTTGCTAAGGATTGACCAGGACAACTTCATCTATTTTCAAGACAGGGTTGGAGACACCTTCAGGTGGAAAGGTGAGAATGTGGCCACAACAGAGGTTGCTGATGTCTTTACAATGGTGGACTGTATTGAAGAAGCCAATGTATATGGAGTTAAAGTACAAGGGCATGAAGGAAGAATAGGAATGGCTTCTGTTAcattaaagaaggaaaaacaatttGAGTGTGACAAAATATATAGCCATATTGTCAACTACATACCAAGTTATGCAAGACCACGTTTTGTAAGAGTTCAGAACGCCCTGGAGGTTACTGGGACATTCAAACAGATGAAAGTGAAACTAGTAGAAGAGGGCTTCAATCCTGTTCTTGTTCAGGATCCCCTCTACTTCCTGGATGAAAGCAAGAAGAGCTATGTACCAATGACTGAGGAGATTCATGCCTCTATTCTTTCAAATACCATCAAGCTGTGAAAATGAGCTTGCTGAATACCTCCTTTATATCAGACAATGGACAATTAATGTTGTGGAATGTATGATTGATGTGTAATTTAGGAAGTATGGATAGGGTGTATGACTGTACCAGTATTCAGGCACTCGTGAGATGGTGGATCAGTTCACCAGGCCATCCCATATCTAAAATGATTCTAAGACAGAAGCTCACACCTGGTGAGTGGTTTGGTAACAATAGGAAACACATTTCTACAGCCCGAGAAGAATAAGGGGTTATTTTGCAGTAGTTCAAGTTATTCAGTATGCCCTGAAGAGCACTGTTGTGTAGATAATGTCTTAGGTGACAGTTCTTACATTGAGCCATAGGAAAAacgcaaattaaaataaacaaataaaacatcttaGTCTAAACACAATGATGAACAATTTCTACTATTTTGTAAAGGATaattattgcttattttatttactaaaaatgaaatgtgattaattgtgaGTTTCTATGTATAATTTTAGACAATTTTTTATGGTGGTGGTCTATAACTGTGGTTAACAATGCAAAGAAAGGAAGTACAGAATgatgaaaaaacaatgtatctGCGGTTTGGATTAaacacattcaataaaaaaatatccaatgggatttgtacatttcaaaaataaagactgaaCAAAGGGAACTatgcaaaaatgtacatttctgtaaGAATTGCATGTTGATCCCATTATGCGAGAACAAATAAGgaagaaattatgaaaatgcaaatccACTCCAACATTA

Function

GO: NA

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30913 lncRNA downstream 78106 22260847 ~ 22262493 (-) True G24640
TU30830 lncRNA downstream 206618 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA downstream 206618 22131389 ~ 22133981 (-) False G24579
TU30786 lncRNA downstream 331166 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 396928 21942952 ~ 21943671 (-) True G24515
TU30974 lncRNA upstream 74657 22432067 ~ 22432313 (-) True G24687
TU30996 lncRNA upstream 88960 22446370 ~ 22448954 (-) True G24705
TU31016 lncRNA upstream 161012 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 206681 22564091 ~ 22576454 (-) False AMCG00007572
TU31117 lncRNA upstream 596675 22954085 ~ 22954844 (-) True G24797
AMCG00007566 mRNA downstream 3525 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007558 mRNA downstream 52363 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007552 mRNA downstream 159478 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007550 mRNA downstream 187099 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007551 mRNA downstream 222497 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007564 mRNA upstream 91875 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007571 mRNA upstream 118000 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007573 mRNA upstream 175246 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007574 mRNA upstream 188124 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007572 mRNA upstream 204086 22561496 ~ 22576449 (-) True AMCG00007572
TU30382 other downstream 1867895 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2008788 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2417446 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3562961 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4281650 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1614261 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1908414 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2906922 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3273385 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12512025 34869435 ~ 34869807 (-) True G26961

Expression Profile