RNA id: TU30958


Basic Information

Item Value
RNA id TU30958
length 1647
lncRNA type sense_over
GC content 0.45
exon number 3
gene id AMCG00007565
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22340599 ~ 22358446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGATGGCCGGCGAGAGGcttcctccagagggaagaccacagccagcagtaccgataaagaactttctgatctccatgctgctgtaataactatactgcctggaggggaggcaaccattaggcctaggcccaaagccgtggacccccagagattaattttctcctacatgccatccataggagtttttggtttttctctcctccatgcctaaatgatttatttatttatttcatgtaaaatgtttacaggtctatatttattttactttattgtatttatgtattattttattttgctgtacgtttgttgcacgttttccagtctgtaaagcactctgtggctactctgcgaagggcgctatacaaataaaaattgattgattgattcaagTCACCTGCAGTGAGTACTGCTAACAGAATTGGAACAAGGCAAAGGCATAAAACAGGCAGACTTCAGACACTTTACTGCCTTTTCCTGCTGGTAAAACACATGGATTGGAGCAGACAGTATTTCAGAGTGCAATGGAAGCCGGTCACCATATAGCACATTGGACAGCTCATGATGATTGCTGAGACTTTATGCTTGCCATAGTCCTAGAGGACCGTAGAGGTGAATGAAAGGAGCATGGAGGTGCGAGGCTGAGGGACAAGCCAGAATGAAACCCAGAAGAGACTGGACAGAAATAATGATGGGCTGGACCAGCTGGGCAATGAATCACATGATGAGGAAAAAACAGATGTCTACACTGAACAAATATCACAGAAATTATTGACATGGCACAGGTGGGGAGGCTTAATACAGCTGTTCAAGGGAACACTAGAAGCATTGAATTGACTGCTACACAGGAAACTGAAACTCACTATCAATGAAACAGAAGGCGGGAACTATCCTTTCTAATCTGTAGGCTAAGGGTGGATTTACAACCCTACACTGCCAACAGCTGTCTTTCTGTGACTTGCAAGAAGCTAAAAAGATCTAcataagcaaattatttaaCAAAGGGTTCAGGTACTTAAGTGAGGAGTCAACCACAATGGAAAACCAGCAAACACTGGTGTCCTCAGGACTGGGTTTACAAGGTCCCGTCATAGGCAATGTGCAAGGTTCCTACAACTCTCACCTGACTCCTTTGTACAAAGATATCACGTCCAGCTCGAATGAAGTCTGCAGCATCGAAGCACGGCTCATATTCCGTGGTGACAAACTTCCCTTCAGCAGCCAGTTTATGCCTGTCTTCTACAGTGCGGATAGGGTATTCCTGGTCGTATAAATCATTGGCCATGGTTGGTTTTGGAGCAGTAGTCCACTTTGCACCTTGTTTGAAGTATTCTTTAATGAGAGGCCGGTAAGCTCTGTATTCAAAGAAGCGAGATCGCCAGGCCATCGGGGCTTCAATGATCTCATTCCCCACAATAAGGAGGATGTCTCTCGGCATGGCAGCATACATACCTGTGGATGTAAAGTCAGGGGTTTTATAGACAACAGACCAGTCAATGGGTTCTGGTCTCCTGACAGTAACTCCCTCCAGACGTAGAATATTGCACATTTCCTCTATCTCAGTAACGGCCTTCTTCAAGTGATCCTCAGGAAAGCTCTGACCGCCATGCTTCTGGTAAAATGGCCAGTACTTCTCATAGGTGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30913 lncRNA downstream 92957 22260847 ~ 22262493 (-) True G24640
TU30830 lncRNA downstream 221469 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA downstream 221469 22131389 ~ 22133981 (-) False G24579
TU30786 lncRNA downstream 346017 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 411779 21942952 ~ 21943671 (-) True G24515
TU30974 lncRNA upstream 73621 22432067 ~ 22432313 (-) True G24687
TU30996 lncRNA upstream 87924 22446370 ~ 22448954 (-) True G24705
TU31016 lncRNA upstream 159976 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 205645 22564091 ~ 22576454 (-) False AMCG00007572
TU31117 lncRNA upstream 595639 22954085 ~ 22954844 (-) True G24797
AMCG00007566 mRNA downstream 18376 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007558 mRNA downstream 67214 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007552 mRNA downstream 174329 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007550 mRNA downstream 201950 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007551 mRNA downstream 237348 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007564 mRNA upstream 90839 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007571 mRNA upstream 116964 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007573 mRNA upstream 174210 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007574 mRNA upstream 187088 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007572 mRNA upstream 203050 22561496 ~ 22576449 (-) True AMCG00007572
TU30382 other downstream 1882746 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2023639 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2432297 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3577812 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4296501 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1613225 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1907378 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2905886 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3272349 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12510989 34869435 ~ 34869807 (-) True G26961

Expression Profile