RNA id: AMCG00007566


Basic Information

Item Value
RNA id AMCG00007566
length 918
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00007566
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22332066 ~ 22337074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGATGTCGAAATATGAAAGGAAAAGACCATATCAAACCATCTTGGACTGTTTTTTGGACTGGGTCAAGAAGCAGCCAGACAAGCCCTTCATCATCTTTGAAAACAAGACGTACACTTACCTTGATGCGGATAAACGAAGCAATCAAGTTGCCAGGGTCCTGTGGAAAGACGCTGCCCTGAAAGAAGGGGATACAGTTGCTCTTTACTTGGGGAATGAACCATTTTTTGTGTGGATTTGGCTGGGCTTGGCTAAAATAGGATGCGCAGCTGCACTTCTCAATTACAACATCAGGTCCAAATCCTTTCTGCATTGCTTCTCCTGCTGCGGGGCCAAAGTGCTGATAGCTGCTCCAGAGTTGAGAGACGCAGTTAAAGATGTGTTGCCCAAACTGAGAGAGGACAACGTCCGTGTGTTTATCCTCAGTGAGGAGTCGAATACAGTGGGAATCGAAAGCCTCACTGACAAGATTGACCAGGCCTGTGACCAGCCACTGTCACCGTCCCTGAGATGGAAGGGGGAGAATGTGGCGACCACAGAAGTTGCTGACATCCTAAGCATGGTGGATTGCATTGAAGAAGCCAATGTGTATGGGGTCAAGGTGCCAGATCATGAAGGGAAAATAGGAATGGCTGCCATAAAATTGAAAGAGGGGGAAGATTTTGATTGTGCAACAGTGTACAATCATGTTGTCAATTACCTTCCCAGTTATGCATGGCCTCGCTTTGTAAGAATTCAGAACTCCCTAGAGGTAACTGGGACATTCAAACAGATGAAGGTGAAGTTAGCAGAAGAGGGCTTTAACCCGGCTGCAGTCCAAGACACCATGTACTTTCTGGACGAGAGTGGAAAAGGCTATATTCCAATGACCCAGGAGATTTACAATTCCATCATTTCAAAGAACACTAGACTGTAA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30913 lncRNA downstream 69573 22260847 ~ 22262493 (-) True G24640
TU30830 lncRNA downstream 198085 22131389 ~ 22133981 (-) True G24579
TU30831 lncRNA downstream 198085 22131389 ~ 22133981 (-) False G24579
TU30786 lncRNA downstream 322633 22005734 ~ 22009433 (-) True G24551
TU30743 lncRNA downstream 388395 21942952 ~ 21943671 (-) True G24515
TU30958 lncRNA upstream 18376 22355450 ~ 22358446 (-) False AMCG00007565
TU30974 lncRNA upstream 94993 22432067 ~ 22432313 (-) True G24687
TU30996 lncRNA upstream 109296 22446370 ~ 22448954 (-) True G24705
TU31016 lncRNA upstream 181348 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 227017 22564091 ~ 22576454 (-) False AMCG00007572
AMCG00007558 mRNA downstream 43830 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007552 mRNA downstream 150945 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007550 mRNA downstream 178566 22144749 ~ 22153500 (-) True AMCG00007550
AMCG00007551 mRNA downstream 213964 22069642 ~ 22118102 (-) True AMCG00007551
AMCG00007543 mRNA downstream 263373 22049753 ~ 22068693 (-) True AMCG00007543
AMCG00007565 mRNA upstream 3525 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007564 mRNA upstream 112211 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007571 mRNA upstream 138336 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007573 mRNA upstream 195582 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007574 mRNA upstream 208460 22545534 ~ 22551557 (-) True AMCG00007574
TU30382 other downstream 1859362 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2000255 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2408913 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3554428 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4273117 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1634597 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1928750 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2927258 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3293721 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12532361 34869435 ~ 34869807 (-) True G26961

Expression Profile