RNA id: AMCG00007568


Basic Information

Item Value
RNA id AMCG00007568
length 2530
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00007568
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22552690 ~ 22560767 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagatctgcgcagagctgcgggaatctgcgcgaCGAGAACGCGACGTACGGCTTGATCTCCGCCTGGTTTCGATGCCTCAGGAAACCATTGGTTAATGCGATAGTGAGTGCGCTGTTAACACCGCTGCTCGTCCTATTTCTTTTTGCAGTTTCGTTCCAGATCCATGAAGTTCACTGCCGTAAACCCGTTCTTTATGCTCTGAAGacttaaattaacatttagtgGCTATATTATAAGTCAGCTCGACATCTTACTAACATCCTTGCTTTGTGAAGGAGGCAGTGCAGCTGCACACCAGTCTCCTCGCATGCAACAATTGGAAAGCGCACtgttcacagacacacatcgTCCACCTTTGAATGATCATCAATATTAATACTTCCATTAATGGACGACTAGGAAGTCATCTGTCTCACAAATACGGAAGTTTAAATATCTGCTATGAACGCTTCAGCTGGAACCGGAGTTTTTGTGTTGACTTTGCTGTCAATACCTATCACCTATCTGTTTAACTTTTTAATCCACACAAACAGCACTGGAGCGGTCATTGTGGCTGTTGCATTGATCTTGCTCGTCATTGCTGTCCTGGCACGCATTCTGCTAAAAAGAAGTGCACCAAAAGATCCTCTTTTTTATGTTTATGCTGTGTTGGCGTTTATGAGTGTAGTGAACCTAATTATAGGACTGGAGCAGGATGGAATCATAGATGGATTCATGACCTTTTACTTAAAAGAGGGGGAGCCTTACATGAACACAGCTCATGGACATATGATATGCTACTGGGATGGCTGTGCACACTATCTCATGTATTTGGTCATGGTGGCAGCGATAACCTGGGGGGAGAGCTACAGAGCAATGGGCCTGTATTGGATGGGGTCCTTTCTAATGCGTTTAATAGTCTACATACCTGGAAATGTAGTTGgtaaggaaacaaaacaaggaaattgaAACCCTTGACATGCCAGATAGTGCTTCAGAAAAACTCCCACTTACAGAAGCAGAATTTAGGGATGGTAAATAACTGCAGATCCCAGCTGCTGACTgtgcaaaatgtgtgaaaaccataatttaattatttcctgttcaaaataataatggccTTATTAGTCAAATCCACCAAACTAGATTAGACATCATAAGACAACATTGTATAATGGTTCAGCATGGAATATATCATTAGTATTGGTATTCAATTCATATTTCACAAAGTTAAATACATAGGAGACATTAAATAACGATAAATATCAAGCTTTACACTTCCCCTAAAATGAGGgaggttattaaaaaaaggtgTTAAAGCTGTAGCCAGGCAGTCTAATGCTGTTTTATGGATATTCTCTGGAATATGTATTCTCTGTTACATGCTTATGGACATACAGTATGCATCATCAGTGCTTTCTGGGTCAGGAGAGGCAAATCTTTTGGCTTTCTTTCTAGGGAAATATGGAACACAGCTGCGGCCTTCTTTCATTATGAATGCACCGCATATAATTGTGTCGGTGTGGGCATGCTTTCGGATCGCCAGTCAGCCACCTGCAAGAGAAGCCTCGcctatgggCATTCAGGAAGACCACAGGAAAAGACTGGTGCAGAGACCCTTGGATCTACTCTTCACCCTCTATCTCATTCCTGCCACAGCCTTCTGTATCTTTAGGGGCCTGGTGGTGCTGGATTGCCCCGCTGAAATGTGTCAGAAGTATGTGCAGGACTATGAGCCGTACCTTAGAGATCCTACAGCCTATCCCAGAATTCAGATGCTGGTAAACATGCTGTACTCTGTCCCGTATTACACTGTAACCCTCTATGGTCTGGTGGTTCCTGGCTGCAGCTGGATCCCTGACTTGGCACTAGTGCATGCTGGGGCAGTGGCACAGGCTCAGTTCGCCCACATTGGGGCCTCCCTGCACACTAGGACGCCTTTTACATACAGAGTTCCCGAGGAAGCAAAAGCACTCTTTCTATTCATCAATATCCTTTATGGGGCTGTACCCCAGCTCTTCAGCTACAGATGTATCAGCAGTCCCGAGTTCTTCCTTACACCcaaagagaataaaaaagatgaataaTGTAAAgggtgtatatattaaaataaataaataaagcaaacctGTATTTCCAAGCTTCTGGCAAGAGAACTTGAAGCAACATAggacaatattgtatttaacattCCTTTACACTTAAAGGAAAAGACATTGCGAATTCATAATTGAGTTCCTAtgccttattatttttttcttttaacgttcttacatttcttctttgtttttggttcttgatttttattgtaaaaggtTTATTTCCATGAAGAATGTCCTTGTTTACTTAGACATGGTACTCTGGGAACAGTGTTATATGTATCTCCACCCAGCAAATATTGCCAAAAAGCAGTATGCTTTGTGTAGGTACTATGGTGCTTAGAATATAGTAAGCTGTAACATTTAGGTGCCTTAAACTGTGAGCAGAATGTCTAAGTGATAACtacaaatgtgtaaatacaatgaataaagtgatttttcttttttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30991 lncRNA upstream 90138 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 91227 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 92377 22459884 ~ 22460313 (+) True G24699
TU30988 lncRNA upstream 93173 22459020 ~ 22459517 (+) True G24698
TU30985 lncRNA upstream 95929 22455266 ~ 22456761 (+) True G24695
TU31039 lncRNA downstream 20702 22581469 ~ 22583154 (+) True G24742
TU31113 lncRNA downstream 392842 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 573051 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 721921 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 845192 23405959 ~ 23406837 (+) True G24897
AMCG00007570 mRNA upstream 3281 22536885 ~ 22549409 (+) True AMCG00007570
AMCG00007567 mRNA upstream 32403 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007569 mRNA upstream 78289 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007563 mRNA upstream 103736 22441995 ~ 22448954 (+) True AMCG00007563
AMCG00007562 mRNA upstream 120845 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007575 mRNA downstream 116279 22677046 ~ 22685708 (+) True AMCG00007575
AMCG00007577 mRNA downstream 130586 22691353 ~ 22697421 (+) True AMCG00007577
AMCG00007582 mRNA downstream 230126 22790893 ~ 22852795 (+) True AMCG00007582
AMCG00007583 mRNA downstream 296748 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007581 mRNA downstream 345691 22906458 ~ 22920751 (+) True AMCG00007581
TU30868 other upstream 269732 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1485907 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3496557 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3982226 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4260352 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 628693 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1631454 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5523055 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5892242 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6442328 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile