RNA id: AMCG00007570


Basic Information

Item Value
RNA id AMCG00007570
length 1803
RNA type mRNA
GC content 0.47
exon number 18
gene id AMCG00007570
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22536885 ~ 22549409 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAACCCCTTCTCTCCGCCGCAAGTGGAGAAAACGGTATGGAGGCCTGGATGGCAATAAATTACTAGAGCCAAATGAGGAGGAGGATATTAAAGCAGCTTCAGTGTACATCAGCAATGGGAACCAAAAGTCTTTAACTCCCCATGGAGAGCAAATGCGATGTAACAGCCCCTTCTGGCATGGTATCAGCAGGCTTGACTCTCCACAGGCTCACACAAGAAAGAAAGTGGCTGCTGATGTCCTCTTTGAGAGTTTTGCATCTGAGGGAAGGGTACGCATGGCACAGTTTTTCGAGACCATTTGGAGCTCTGGAATTCGAAAGTCTGACCCCAGGATTAAGGACTGTTACTTACTCATGAGGAAGCTGCAGGAGGCCGATGGCACTGTGGACAGGAACACCTTTCACAGGTGTGTGACTGGCTTTGTGTCGTTCATTCTGAAAGCACTGCAGGGAAGGTTTGTCATTCCAGATTTCACCACATTCACTGAAGAAACACAGAAGCTTTTCATGAAGTGCAAGCAGCTTGCATCTTTCAAGCTGGAGCAAGATGCTGCAACCGACAACAGCAGGAAATGGGGAGTCTCTATCTGTACAGTGGATGGACAGAGGTTGTCTCTGGGGGACTCTGCAGACCCCTGTATCTTAGGAGAGGCTTCGTGGCCTTTGATTTATGGCATTGCTGTTGATCAATTCAGCGCTGACTACGTACACAGATACGTGGGGATGGAGGAATTTTCAAGATATGAATCACCCTTTATGCTCACTAAAAAAGGTGTTCCCCACAGTCCATTTGTTGAGACAGGAGCTGTTATTACTACATCTTTATTACAGTTAGCTGCAGGACTTGGTGCAGAGGACgaggaaaaatatgaatgcGTTTTGAATATGATTAGAAGACTCTGCAATAAGGAAAATGCCAACCTCAACTGCACAAGTTATCAAAGCCTGAGAAAAGACAGCATCAGACTTCATGCCCTCTCATTTTTTCTCCAAGAAAAGAAAtgttttccaGAGTCTGTAGACATTAGTACCACTTTGGACTTGATGCTACAGTGTTTATCGACAGAAGTCTCGTGTGAATCCGGGGCTGCTATGGCTGCCACATTAGCCAACGGAGGTCTATGTCCCCTGTCAGGTGACCAAGTCCTGAATCCTTCCTCCACCCGGAGCATGCTCTCCATGATGCAGGTGGCCGGAATGAATGACTACTCCAGGACATTCCATTTTAagactTCAGTACCTGCCAAATCCAGCAAATCAGGCACCTTATTAATAGTGGTACCCGGTGTGATGGGTGCTATGTGTTGGTCCCCAGAGCTAGATGCCTATGAAAACTCTTGGAAGTCTGTTCACTTTTGTCAGGAACTGGTATCAGCATTTCAGCTACACAGCTTTGATATAAGGACTCCATTTCGCCAGGTGGTCACATACAGGCAATGGAAAGCAGAATCTGAGGGGTATCAGATAATGAACGTGTTGCTGGCTGCATACAGAGGAGATGTAAGGTCACTACGAAGGTACTTTCTGTCAGGAGCTGATGTACATTCTGTCGACTATGATGGGAGGTCTGCCCTGCATGTTGCCGCCTCGGAGGGACACCTTGAAGTTATAAAGTTCCTTGTTGAAAACGCTGGGGCAGATTTCATGACCCATGACAGtaAGTGGGAGCTGTTGCCGATAACATTCGGCTTCAGCCCAGCGAACTACAGCGGCAAAAAGCCGGCTCTCTCGAATTCCCAAAGTGTCTCTCTCCAGCACAGCGCAGAGTGTATCTACACACAGGAAGACATCACTTATGagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30991 lncRNA upstream 74333 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 75422 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 76572 22459884 ~ 22460313 (+) True G24699
TU30988 lncRNA upstream 77368 22459020 ~ 22459517 (+) True G24698
TU30985 lncRNA upstream 80124 22455266 ~ 22456761 (+) True G24695
TU31039 lncRNA downstream 32060 22581469 ~ 22583154 (+) True G24742
TU31113 lncRNA downstream 404200 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 584409 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 733279 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 856550 23405959 ~ 23406837 (+) True G24897
AMCG00007567 mRNA upstream 16598 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007569 mRNA upstream 62484 22463106 ~ 22474401 (+) True AMCG00007569
AMCG00007563 mRNA upstream 87931 22441995 ~ 22448954 (+) True AMCG00007563
AMCG00007562 mRNA upstream 105040 22408928 ~ 22431845 (+) True AMCG00007562
AMCG00007561 mRNA upstream 172691 22353612 ~ 22364194 (+) True AMCG00007561
AMCG00007568 mRNA downstream 3281 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007575 mRNA downstream 127637 22677046 ~ 22685708 (+) True AMCG00007575
AMCG00007577 mRNA downstream 141944 22691353 ~ 22697421 (+) True AMCG00007577
AMCG00007582 mRNA downstream 241484 22790893 ~ 22852795 (+) True AMCG00007582
AMCG00007583 mRNA downstream 308106 22857515 ~ 22879252 (+) True AMCG00007583
TU30868 other upstream 253927 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1470102 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3480752 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 3966421 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4244547 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 640051 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1642812 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5534413 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5903600 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6453686 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile