RNA id: AMCG00007571


Basic Information

Item Value
RNA id AMCG00007571
length 5027
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00007571
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22475410 ~ 22487415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcCCACAGGTAATCATTAACAGCACAATCACACCAAATATGACCTTCACCAAGACATCACAGAAGTTTGGCCAGTGGGCTGACAGCAGAGCAAATACTGTCTTTGGTCTTGGCTTTGCCTCAGAGCAGCAGCTAGCAAagGAATCGGGACGTGAGACCCCCTCCTCCACTCAGGCCTCCAGCATCAACGGTACTGACGACGAGAAAATCTTCCATGGAGGGCCTGTGGATGCTCACCTAAAAAGCGAAAATGACAGACTGAAGACTGCCTTGGCACAGGGCTCCACCAATGCAAAAAAGTGGGAGACGGAGCTGCAGACACTGAGGGACAGCAATGCCCGGCTCATTGACGCCCTGCAGGAGTCTGCCAACAACGTCGAGCAGTGGAAGAAACAGCTGGCCACGTGCAAGGATGAAAGCGATCAACTCAGGAATAAGATTACAGAGCTGGAAGCACAGTGCAACGAAGCGAACCTCGAGAAGGAGCGCAACGCACAGCTCTCTGTCCGTGTCCAGCAGCTGGAATCTGAACTTCAGGAGAAGGAGCAGGAACTAGAAAACCTGAGAAAACAGGCAGAGATCATCCCTCAGTTAATGGAGGAGTGCGAGTCTGTTACTCAGAAACTACAGGCTGCTGAAATGAAGAACAAAGATTTGGAAGACAGAATACAGACATTGCAAACAGACATAGAGGAAAGCCACCACAAGCAAGGCCACCTGAAGGTAGAGCTGAAGAATTTCCTGGATGTTCTGGATGGAAAAATCGATGAGCTGCACGAGTTCAGACAAGGACTGTCCAAATTAGGGATCGATAACTAAGGGAATCGATTTTCCACGTGGAAAAACAAACTATCAGGGCCTCAGATGTCTGTGACTCGCCTCCCCCAAAGTGTGTgtcacaaacaacaaaacaaattgaaacactaaacaaaacaaacaaaaaagcaacaattgACAAGAGTGTTCCACTTGTTTGCATCTTGTGTAGAGGTTCTGAATTCACTGTGTTTGAATCTAATTTGCTGCTTGCCGAGATGTGTTAATGATCTGGTTGTTGAAACAAAATGGAGTTTGGTGGACAGGTGGATGCCATCTTAGATTTCTGGAACGAAGCCTGAATTTAAGGTGTGTGCTGTTAGAATTTgcagggggaaataaaaatacttttttttttcccagaagtGCTGAAGAAACCATGGAAAAATGTATAGTATGACGCATCAGACTAataatgattttgtattattcacagTGAAATCTGAATCACACCGGccacaaataaaagcaaaatctaGGGCTTGTTTAAGAGCTTGTCAGCAGTTAATAGATTATGATCTCAGGTGAGTTTTAAGACCGTTTTCACTCTATGATATGCACATACATTAACTGCACAGTGTCACAAAGTGCCTCAGTTTAGAGTCTTTCTTAACTGAAAGGAAATTCTTTCTCCTGGCAGGtagcttttgttttctcatcCTCACTAAAGAGACTCAaggatctttattattattatttctggtttgttatttgtttgtgtgttcgGTCTTTCTCCTGCTGCCTGGTAAttacagaacatttaatttcaaaggtGACGGCCTTTAGCTGGAATGATACGCCAAAAGTCAAAAACGTTTCAAAGACAACTGAGAAATAATGGACATCAATTAGCATTTGCATTTATCATTGtgatatagtaataataataataagagaaaACGTACTCAGCATTATACTCATGACAATGCAAATATGAAGCAACATGGGAACAATGCCCCGTGGCTGTTGTTATGGTGTTCTAGATCAATGATTAAGGACCACTacaaaggaaatattaaaatccTGCTTCCTCTTTCAAAGTCTCTTAAAATGAAGAGAGTGAATGTAGTTGGGAGGCATTGGTACTAATCCACTGGTGCTTTGAATACACAGTTTGCAGGATTGTATGTGCATAAGACAGGAAGGAAGGGCCTTTCTGGGAATGAAGGGAATGCTTCATTAAAAGGTAATTATGTAGCAAGCCATGGTTCAAGGAAGATAAGGTGTATACTGGAATAAGAGACCCAAAACTAGGTCAGAAtctcaataaataaagtgaGTGCTGTGTTTGAAGGATTTTGCATGTATCTGatgaagattgttttttttttcttttcttctcctcaaAAGGAAATCTGTCTTTGAATAAGTAGTTTTAACATGTAAAGAATGTGCTTCCCACatgaatttgtcttttttttatgatggtggtttgggggtgggggtgtattTATTGCTGCTAGACAGTGAAATTACAAGTGTACTACATTTGACAAACAAGACGCTGTGGGCTTCTGTAAGCAGTGCCATTATATGAAGTTGTATTCCGGACATTGTATGTGCGGGTGTCTATAGATGGTTCAGTAGAGCTGGTCGTAACCTCGACCCAGGAACTTGACTGCATCGTTTTATGTTCTCTAAGAGTAcagtgctttcattttcatGCTTGGACAGTATGAGTTACCTGGGTGAGGAAAacatccttttaaaaaaaaaaaaaggaaaaccaattattattatttattagctaCAAAATCAATTCTTCATGATCTGAATTCTGGAGCTCATCTGGGTCATCTTAATCAAGGGGACTAAAGCAGCatatgccttttattttattttttattttaggaaatatGAAAAGTCCTGCATTTTCTCTTCTAATGCAGTgctatgttgtttttaaatattgcagtTCAAGAAGATACAATGGAAATGTAGATTCACATTTGTGGGAAACACtaatttgctttaaatgtatatttttgatcacatttaaatctatttatgaCACTGTCAAGCTAGTGTTTGCTACAGATGGACCACTTATCTTCCATctccaaatataaatatttcctCATCTCTTCAAGTGCTGAAACCggattgtgtttactgttttatCTGGGTCGTCTACTACGGCAACAACATGAGTACACTTGACTTTTTCCTTCCTTTAAAAAGGACTCCTATCTACCTTCTTGTGATTTCTATTCAAATTATTGTATCATATAGAGTTGTTTATTgtcaaaatatagtttaattaaaagatgctgtcccttttgtttttctttcctacCTGTGTTACACCACTGCAGTGCTGTTCTGCTGAGACAAAGCTTTCACGTGtggtgcattaaaaaaataataaaaggaattGAAGACTACAAACTATGATGCCGTACTCGAACGTGCGGCACAATGCTGACACTCTGCCCTGAATGTGCATGGTCTGACCTCCGCCAGTAGTGTAAGTAGGCCTGCGTGTAATTCAACAGctctgcttaattaaacaacaattaTTGATGTCATTAAGTCATTTGTTAGCTGTGTATGCCACATAAACCTGCTAACAGTAACATctacaaaacacaaaggaaGGGGCTGGCGAAATCTTAATTAATCcttgtttaatttgattgacatttgactgttttttccctttctttaattatccagtgtgactttttaaatatatatatatatatatatatatatatatggttggGTTTCTAAAAAACAATGTAGATTCCCTTGTTTGTCTTCTGTGTAGATGTCTATGCCTGTAAAGAGGAGGACATGTTGCCTTGGAAACTTGATCTCCACTCAGTCCAACTATTGATTTTACTCTTGCTGCAAATAGCAGTATAAAGGATTTATGGcataatgtaaaaatgcatgtgtgtattgtgGCACTTAAATGTAACTTGTTTTCCCAAGAAATGCAGGATATGTGTTTATATCAAGCAGAGACCCTTTCTTCCTCACCTTCACAATGAACAGAATAGCTAGTTTGAGGGAGTTATGTGTTAATGCAGGGGTACAGTTCTGGTGCTGTTGAAATACTACTTAGAAATCACCATGTACTTACAAACTTGTTATGTATTGGTcagatctttatttttaagtcgATCTCACACTGGATGAGAAACAGTGTTGCAGGCTTGGCTGTATCATCCTCCCCGTTGAGAAACAAATTGTTCTCAGCCATTAAGCAGAGATCTGAAAGGGTATAAAGCTAGTCTTTCAACATGACCTCAGTCCCGTTGAATGATTATGGCTTCCAGTCAGGGTATGCCTTTCAGTATCTctttaataatactaataataatactaataataatattaataattaataatataatctatCAATGAAAATCCCAGGCATCTGGTTCTATAGGAACTGAAAAGCTTTTTATGGACACTCACAATTTCTTTTGTATCTGTATGATAAAGGCCATTGGGCTGAAATATTTGTTCTTGCCAACTGCTAGCAGCAGTAGTTTTGTATAAATTCTAAGGACTTcttttatatcaaaaataaataaaaataaaatgttcaagatgcatttttaaactctGTTCCTCATAAAGAGTGCAGACCTTTTTTTTGtaggattttgtattttgtatttgatatagGTTAGTGtacaatttctttaaaacaaatgcagtttctCTCTCTAATGTTGATCATTCCAAAAGGTGTTGCTAAActgggaggggaaaaaaaagcatgagATTTTCCTTCAAGCGGAAAAAGGTTTACAGTGGGagcataaaaataatttttgTGCATGTCTTTCTGGTAGGGTGTTTCAGATCTCTGTCAAACATTCTCAATCTGTCAGTGCGTTGAGTGGGTGAGttggtaaaatataattaagaatGTGTTGCAGAGATGTTACTGTAGGCTACCACCACTGAGCAATCCTGTTTCCATAGTAACCCTGGTTGCTGGGTTTTGTATTTGCTCTGATGGTTTGATCTGTGCTTGGGGTGTTTTCTTCCTGAGGTGTCCCTTATGTTGCCCAAAGCCACTGAGATGTCATTAATGCATGTTGCTGGAGAATTAAAATGTGCTACAAAAGCCTTGAGGGACATTCGGCaaataaagtgttacaaaaCGGTGGTAATTGCcctggtttaaaaatattttgaatattgtcattGATTTAGTACGAGGCTTGCTTTTGAAGCACAAAGGACCAAGG

Function

GO: NA

KEGG:

id description
K15010 HOMER; homer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30996 lncRNA downstream 26456 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 43097 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 116964 22355450 ~ 22358446 (-) False AMCG00007565
TU30913 lncRNA downstream 212917 22260847 ~ 22262493 (-) True G24640
TU30831 lncRNA downstream 341429 22131389 ~ 22133981 (-) False G24579
TU31016 lncRNA upstream 31007 22518422 ~ 22521084 (-) True G24721
TU31045 lncRNA upstream 76676 22564091 ~ 22576454 (-) False AMCG00007572
TU31117 lncRNA upstream 466670 22954085 ~ 22954844 (-) True G24797
TU31120 lncRNA upstream 558698 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 646376 23133791 ~ 23134802 (-) True G24816
AMCG00007564 mRNA downstream 4979 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007565 mRNA downstream 118000 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007566 mRNA downstream 138336 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007558 mRNA downstream 187174 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007552 mRNA downstream 294289 22177466 ~ 22181121 (-) True AMCG00007552
AMCG00007573 mRNA upstream 45241 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007574 mRNA upstream 58119 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007572 mRNA upstream 74081 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007576 mRNA upstream 96314 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007579 mRNA upstream 198821 22686236 ~ 22687435 (-) True AMCG00007579
TU30382 other downstream 2002706 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2143599 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2552257 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3697772 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4416461 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1484256 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1778409 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2776917 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3143380 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12382020 34869435 ~ 34869807 (-) True G26961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000317_00060869_00070360.mRNA True 1978 mRNA 0.49 9 CI01000317 60869 ~ 71260 (+)