RNA id: AMCG00007572


Basic Information

Item Value
RNA id AMCG00007572
length 2103
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00007572
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22561496 ~ 22576454 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTGGGTGCTCGGCGGCTCTGCGTGTGAGATGAATCGGGACAGGATGCGAGGAGCGCTGTAGCCTCGTCGGTCACACCGCGGCGACACAGCAAGGCCCGCCGGGACCCAGACTGCTTCAACCGCGTCTTTTCGTCGTGTTATCCGGATCTTTTAGTGTTAGAATAGACGAAGAAAGGGTGCATTGCTAGGGCCTTTCgccgtttttatttatttatttccattttctttccacacacacaaaaaaaggctgCAGTCTTGATATCAACACATTCTCACTCCATCATttcaatacattgatttgcCTGTAAAGAAGAATATATATCTGCGTGTGCGTCTAGGTTATATTTACACAATGGCTCGTCCCCGGCCTCGGGAGTACAAAGCTGGAGATCTGGTTTTTGCCAAAATGAAAGGGTATCCACACTGGCCAGCGAGGATCGATGAACTCCCGGAAGGGGCTGTAAAGCCACCTGCAAATAAATACCCCATCTTCTTCTTTGGGACTCACGAAACTGCATTTCTGGGTCCAAAAGATCTGTTCCCATACAAGGAGTATAAAGATAAGTTTGGCAAGTCAAATAAGAGGAAAGGATTTAATGAAGGTCTGTGGGAAATTGAGAATAATCCCGGGGTCAAATTTACTGGATATCAGCACGTTGCGTTATTCAGCTTGTCCAACTTGTGCCGCATGCAGGCGATACAACAACAGAGCTCTTCGGAGACCGAGGGGGAAGGAGGAAACACTGCGGACGCCAGTAGCGAGGGCGAGGAGGGAGATTCAATAGAGGAGGATGGCAAAGGGAAGAGGAAGGGTGACAAAGCTGGATCCAAACGGAAGAAGACCGCATCCTCTAAGAAGTCGTCTAAGCTGTCCAGGAAGTCCTCGGGGGAAGAGGAAGTGGATAAAGACAGTAAGGATGATGAACACAAGAGCAGTTCGGAGGCTGGAGACCCTGACAACGATACGCGAAATGCTTCAGAAAGCAAGAAAGCCAGCGAAGGGaccTAATTACTCAGAGAAGAACGCTAAATGTTGAGGAAACCCTTTAAGGGAGTCATTAATTGTGGCTGTCAAGTGTTATTGGAGTTGTGAAATTATCATTGCTTTCTCATTGTCTACAACAATACCAGTTCTCCATTAGTAGATGCTGTCTCTTCTCATTACAGTATGTTGAAAGAATCAAATTGAgtcattttcacttttaatcAAAGCCTACTTCAGGTCCACCCATCCATATCATCATGATTTTGTAGACTGTTAGCATGTGGTCACCGCTAACAAGGagctttttttaagaaaaagaaaaaaacaataatatgtttaaaaaaaatccagaaacacacacacaatccgtAGTCTGTATTGCAATGTTCAGATCATTACTTGTAtagagctaaaataaaataaaaatgcattctaaAACCAACAAGATAGAAAATGGACTACCTTCAGGAACATTGTCTGTAGAAGTCTATTCACACCACTGTATCCTCTAATGTAATAAAAAGGCAACAGGATGGGGGAATTAAACTAAGTATAAATAAAACTTCACAATATTCAGACAACTGACTCTTTCAGTATTATTAGTTTAGAATATAGGACCATCTGTTCGacacaaacagattttctttCGTTTCTAAGGGAAAGTTAcgtctgtgttttctgtgcgtCCATTTTTTTCAGCTTTCAGTAGCATGTAGTCCAGACAAACTCTCAATTCACATTTTGAGGGTTTCCCTTTACCTGTGGTTTGATATTTGCTTTACCTCCATGTTGCAAATTTACAAGGTTCATTGTCTGCTGTTTTTGGAACATATAAGCTGACTGAAAACCAACTTTCCTAGCTGGAAACAAGCTCAAGATGGGCATTTGGACTGCAAGCAGAAATTCTGTATTTTCCCTGAACACATTTAAAGCATCTTTGTCCAGAAGTTAAGCATtccattaacattttataagtTACCTTTGCTTTGCTACTTTTTGTCAATAGAAAGaatatattctatttattttttgatgctAGTAAAACAGTTGTGGGGACAGAAACTCACTCTTGAGTTTTTGGTTacgttttaatatttgttatgcTTGTACTTGga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31016 lncRNA downstream 40412 22518422 ~ 22521084 (-) True G24721
TU30996 lncRNA downstream 112542 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 129183 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 203050 22355450 ~ 22358446 (-) False AMCG00007565
TU30913 lncRNA downstream 299003 22260847 ~ 22262493 (-) True G24640
TU31117 lncRNA upstream 377636 22954085 ~ 22954844 (-) True G24797
TU31120 lncRNA upstream 469664 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 557342 23133791 ~ 23134802 (-) True G24816
TU31252 lncRNA upstream 830503 23406952 ~ 23420303 (-) True AMCG00007594
TU31257 lncRNA upstream 847164 23423613 ~ 23437517 (-) True G24905
AMCG00007574 mRNA downstream 9939 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007573 mRNA downstream 26318 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007571 mRNA downstream 74081 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007564 mRNA downstream 91065 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007565 mRNA downstream 204086 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007576 mRNA upstream 7280 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007579 mRNA upstream 109787 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007578 mRNA upstream 120980 22697429 ~ 22707695 (-) True AMCG00007578
AMCG00007584 mRNA upstream 276446 22852895 ~ 22856761 (-) True AMCG00007584
AMCG00007587 mRNA upstream 563073 23139522 ~ 23166677 (-) True AMCG00007587
TU30382 other downstream 2088792 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2229685 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2638343 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3783858 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4502547 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1395222 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1689375 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2687883 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3054346 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12292986 34869435 ~ 34869807 (-) True G26961

Expression Profile