RNA id: AMCG00007573


Basic Information

Item Value
RNA id AMCG00007573
length 1708
RNA type mRNA
GC content 0.36
exon number 4
gene id AMCG00007573
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22532656 ~ 22535178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGGGATAGGAAGTTCTGTTTTTGAATACTTTGAAACCATTATGATCTCCGTTAAATATATGTGattcaaatgttaaatatttatgtttcagTAATGCTTCGATGAGTACATTAACTCTTCGTTCATTTTATACTTTATGTAACCATCTATTTCGAGCGATTAGCCAGACAAAAGTAGGCCTTCAGAATCCCCAGGCTTTCCTATTATTCAGTCCGTTTAACAGGTTTACTAGTCCGGGAAAGAAATTTGTATCTTGTCCCGCTAAGAAAGCAATACAGTGTAGACACTCGCCTGGAAATATCGCCATGCCAAAGAAAGATAAAACGggCAAGAATAAGCCGAAGACCCCCGAAATCCCCCCGAGTCCAGTTTCACGTGATAAAAATGGTCTAATTTCCATAGCTGTGCATGCAAAGCCTGGCTCCAAACAAAATGCTGTTACAGATGTGTCAACAGAGGCAGTAGGTGTCGCTATTGCTGCACCGCCATCCGATGGGGAGGCCAATGCAGAATTGATCCGGTTTCTATCCAAGGTCCTGGAAGTGAAGAAGAGTGAAGTGTCCTTGGATAGGGGAAGCAAATCAAGAGAGAAAATTGTCAAGATTTCAGGTGCTTTAAGTCCAGAAGAGGTTCTTGAGAGACTAAGAAAGGAGGCTGCCAGCAACTAAGAGGATTAAAGGATGATCATGTCGCATTGCTTGGCTTCTTCACGGGGAAAAATGTGTATGCACGGAAGCTCAGCACTGACTAGTGATTAATTCAAATCATTAGTTGCCtcaaaattatgaataaattgACATCAGCTGTTTTGACATTCAAGAACCATCTTGGATCGATATAAATGGGATAAGAACAATAAGCACTGTGTGGACATTGAATGTTTTGTTGCTTCTTTGCTCTTTCTAACAGTTATGTAGCTGCATTCCTAATTTAACAATTAGTACTCAGTACTTCCATAAGTACGTGgtgattttaaatacattttctttatctttaaaTTGTCCTTCATGCTTTTTCAAGGATCAAAAGAATTATGGCTGTAATATGgatttatgtacagtataacTTTACATCCTAGTTATTAAACTATtcttgtctgtctctgtgtttttcaagcatttCAGTTGTTTCTGTGGTGTTTTTTGTCTCTCGTGGAACAGATTAGAAAGGcctaattttacatttctttacatcAACCTAAACCAATGACTAGTCTTGTatcttgcattttaaatcaagcaAAGTGTTTTCAgggatttatatttatatttaatgtatttcagtataATTTATGACTACCCATACATTCCCTAATTTCTGCATCTTgagtgcttttcttttcttctgtgaatgtaatttttttaattcaatgatGGATGTCCATACACGATCATATTTTCTGCCCATTACTTGTATGTCTGGTGAAAAACAGGCATTTAATCTCAGAAGGAGGTCCTGGATAACTGaagtttaataataacattgtacATCATGATGCGAATATATTCTTAAAGCATTATTGTACGggttatgttattattattgttatggttgctctgctaattaaaataatgaatggatTTCATAATATATGCTgccttatttaatatttctaattactctgtgtatctatctatctatctgtatatctatctatatataattgtttagtGGTTGATATTGGTCCCAATAAACCCAAAGTCAA

Function

GO: NA

KEGG:

id description
K09131 K09131; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31016 lncRNA downstream 11572 22518422 ~ 22521084 (-) True G24721
TU30996 lncRNA downstream 83702 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 100343 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 174210 22355450 ~ 22358446 (-) False AMCG00007565
TU30913 lncRNA downstream 270163 22260847 ~ 22262493 (-) True G24640
TU31045 lncRNA upstream 28913 22564091 ~ 22576454 (-) False AMCG00007572
TU31117 lncRNA upstream 418907 22954085 ~ 22954844 (-) True G24797
TU31120 lncRNA upstream 510935 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 598613 23133791 ~ 23134802 (-) True G24816
TU31252 lncRNA upstream 871774 23406952 ~ 23420303 (-) True AMCG00007594
AMCG00007571 mRNA downstream 45241 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007564 mRNA downstream 62225 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007565 mRNA downstream 175246 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007566 mRNA downstream 195582 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007558 mRNA downstream 244420 22276111 ~ 22288236 (-) True AMCG00007558
AMCG00007574 mRNA upstream 10356 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007572 mRNA upstream 26318 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007576 mRNA upstream 48551 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007579 mRNA upstream 151058 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007578 mRNA upstream 162251 22697429 ~ 22707695 (-) True AMCG00007578
TU30382 other downstream 2059952 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2200845 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2609503 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3755018 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4473707 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1436493 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1730646 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2729154 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3095617 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12334257 34869435 ~ 34869807 (-) True G26961

Expression Profile